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AT4G12040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : A20/AN1-like zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G22820.2); Has 1062 Blast hits to 1055 proteins in 152 species: Archae - 6; Bacteria - 0; Metazoa - 438; Fungi - 9; Plants - 479; Viruses - 6; Other Eukaryotes - 124 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111UWCeggNOG:KOG3173EMBL:AF325093EMBL:AF361575
EMBL:AL049638EMBL:AL161533EMBL:AY081720EMBL:AY088226
EMBL:CP002687EnsemblPlants:AT4G12040EnsemblPlants:AT4G12040.1EnsemblPlants:AT4G12040.2
entrez:826812EvolutionaryTrace:Q9SZ69Gene3D:4.10.1110.10GeneID:826812
Genevisible:Q9SZ69GO:GO:0003677GO:GO:0008270GO:GO:0009506
Gramene:AT4G12040.1Gramene:AT4G12040.2hmmpanther:PTHR10634hmmpanther:PTHR10634:SF38
HOGENOM:HOG000238229InParanoid:Q9SZ69InterPro:IPR000058InterPro:IPR002653
KEGG:ath:AT4G12040OMA:QKHPLEIPaxDb:Q9SZ69PDB:1WG2
PDBsum:1WG2Pfam:PF01428Pfam:PF01754Pfam:Q9SZ69
Pfscan:PS51036Pfscan:PS51039PhylomeDB:Q9SZ69PIR:T06611
PRO:PR:Q9SZ69PROSITE:PS51036PROSITE:PS51039ProteinModelPortal:Q9SZ69
Proteomes:UP000006548RefSeq:NP_192941.1RefSeq:NP_849364.1SMART:SM00154
SMART:SM00259SMR:Q9SZ69STRING:3702.AT4G12040.1SUPFAM:SSF118310
SUPFAM:SSF57716TAIR:AT4G12040UniGene:At.19630UniGene:At.71627
UniProt:Q9SZ69
Coordinates (TAIR10) chr4:+:7215341..7215868
Molecular Weight (calculated) 18991.60 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.51
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSEENNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVKNSL KLPSCSIIAP GQKHPLEIKP AHLETVVVTA EPSSVPVAAE
101: QDEAEPSRPV RPNNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRDAI AKANPLVKAD KVQRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)