suba logo
AT4G11880.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 14
Curator
Summary (TAIR10)
AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.
Computational
Description (TAIR10)
AGAMOUS-like 14 (AGL14); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 19 (TAIR:AT4G22950.1); Has 7256 Blast hits to 7253 proteins in 915 species: Archae - 0; Bacteria - 4; Metazoa - 632; Fungi - 309; Plants - 6224; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Protein Annotations
BioGrid:12093DIP:DIP-33798NeggNOG:COG5068eggNOG:KOG0014EMBL:AK230464EMBL:AL078606EMBL:AL161532
EMBL:CP002687EMBL:U20184EnsemblPlants:AT4G11880EnsemblPlants:AT4G11880.1entrez:826795ExpressionAtlas:Q38838GeneID:826795
Genevisible:Q38838GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0009908GO:GO:0010082
GO:GO:0044212GO:GO:2000012Gramene:AT4G11880.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF191HOGENOM:HOG000155301InParanoid:Q38838
IntAct:Q38838InterPro:IPR002100InterPro:IPR002487KEGG:ath:AT4G11880ncoils:CoilOMA:EISTRKMPaxDb:Q38838
Pfam:PF00319Pfam:PF01486Pfam:Q38838Pfscan:PS50066Pfscan:PS51297PhylomeDB:Q38838PIR:T09347
PRIDE:Q38838PRINTS:PR00404PRO:PR:Q38838PROSITE:PS00350PROSITE:PS50066PROSITE:PS51297ProteinModelPortal:Q38838
Proteomes:UP000006548RefSeq:NP_192925.1scanprosite:PS00350SMART:SM00432SMR:Q38838STRING:3702.AT4G11880.1SUPFAM:SSF55455
TAIR:AT4G11880tair10-symbols:AGL14UniGene:At.42992UniProt:Q0WKU9UniProt:Q38838
Coordinates (TAIR10) chr4:+:7143512..7147108
Molecular Weight (calculated) 25493.60 Da
IEP (calculated) 9.59
GRAVY (calculated) -0.82
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS SSIPKTVERY QKRIQDLGSN HKRNDNSQQS KDETYGLARK
101: IEHLEISTRK MMGEGLDASS IEELQQLENQ LDRSLMKIRA KKYQLLREET EKLKEKERNL IAENKMLMEK CEMQGRGIIG RISSSSSTSE LDIDDNEMEV
201: VTDLFIGPPE TRHFKKFPPS N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)