AT4G11860.1::SUBA5

AT4G11860.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
nucleus 1.000
What is SUBAcon?

Predictors

External Curations

AmiGO : cytosol 18433157
AmiGO : nucleus 18433157
AmiGO : plasma membrane 17317660
TAIR : plasma membrane 17317660
TAIR : nucleus 18433157
TAIR : cytosol 18433157

Experimental Localisations and PPI

FP	MS/MS	PPI
	PMID:30447334 (2019): plasma membrane PMID:28865150 (2017): extracellular region plant-type cell wall PMID:26781341 (2016): plasma membrane PMID:20374526 (2010): cytosol PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane PMID:18433157 (2008): cytosol PMID:18433157 (2008): nucleus PMID:17317660 (2007): plasma membrane	PMID:24833385 (2014): AT5G55480.1:None: PMID:24833385 (2014): AT4G26080.1:None: PMID:24833385 (2014): AT5G67050.1:None: PMID:24833385 (2014): AT3G50190.1:None: PMID:24833385 (2014): AT4G30660.1:None: PMID:24833385 (2014): AT5G61240.1:None: PMID:24833385 (2014): AT4G34560.1:None: PMID:24833385 (2014): AT2G31360.1:None: PMID:24833385 (2014): AT5G09470.1:None: PMID:24833385 (2014): AT4G12030.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression	PPI
AT1G12680.1 nucleus [7.23] AT3G55070.1 golgi [6.27] AT2G36960.1 nucleus [6.09] AT5G21010.1 nucleus [5.75] AT4G39910.1 nucleus [5.63] AT1G26830.1 nucleus [5.59] AT1G21700.1 nucleus [5.52] AT3G19420.1 golgi [5.52] AT2G31260.1 vacuole [5.44] AT3G61710.1 nucleus [5.42]	AT2G31360.1 endoplasmic reticulum AT5G61240.1 golgi AT5G09470.1 mitochondrion AT4G26080.1 nucleus AT4G34560.1 plasma membrane AT5G55480.1 plasma membrane AT3G50190.1 plastid AT4G12030.1 plastid AT5G67050.1 vacuole AT4G30660.1 plasma membrane, vacuole

Description (TAIR10)

protein_coding : Protein of unknown function (DUF544)

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF544) (TAIR:AT4G22960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG41102GM	eggNOG:KOG2427	EMBL:AK229419	EMBL:AY085598
EMBL:CP002687	EnsemblPlants:AT4G11860	EnsemblPlants:AT4G11860.1	entrez:826793
GeneID:826793	GO:GO:0005634	GO:GO:0005829	GO:GO:0005886
Gramene:AT4G11860.1	hmmpanther:PTHR18063	HOGENOM:HOG000030476	InterPro:IPR007518
KEGG:ath:AT4G11860	OMA:CREYSTM	PANTHER:PTHR18063	Pfam:PF04424
PhylomeDB:Q8LE63	Proteomes:UP000006548	RefSeq:NP_567383.1	STRING:3702.AT4G11860.1
TAIR:AT4G11860	UniGene:At.33532	UniProt:Q8LE63

Coordinates (TAIR10)

chr4:-:7134237..7138361

Molecular Weight (calculated)

74431.70 Da

IEP (calculated)

4.09

GRAVY (calculated)

-0.58

Length

682 amino acids

Sequence (TAIR10)
(BLAST)

001: MATASSSESP SEETQTNQEA MQQQDLPKET TTEEEILYKT KSIQFLGRTT PIILQNENGP CPLLAICNVL LLRNNLNLNP DCYEVSQERL MSLVVDRLID
101: SNSKVNNKDE GYIENQQQNI ADAIDLLPRL TTGIDVNIKF RRIDDFEFTP ECAIFDLLDI PLYHGWIVDP QDVEAANAIG SKSYNALMGE LVALETQNVE
201: AQGDQNPGED SVDFAAATTA VLGVPSPCLS KTRSFDDSPP AAAELRRMRK GDLEEETELL QALQLSQGQG NDPTPNTNGD STNQDSAFTF SDASPTSTHI
301: TNISQLDQFK TDDDKASEND GNMIKVGKFP TTITTKSEDL NHDQLSSKQS GGETACDVEN VSSSKEAIVD VTSSEALSVD KGNLESAKSE SSSESVLKSD
401: AASIDPDLSC RSQHDDAPNA FIPPVSTDEP MYEGEECVNT VPPVCADKEP VYEGESLLGK RVEKDVGDCS SEGRATDGLT AEEGELIRNF MKNSASQLTF
501: CGLFRLQEGL KERELCVFFR NNHFCTMFKY EGELYLLATD QGYLNQPDLV WEKLNEVNGD TAFMTATFKD FTIDSSTGGA SGTWDERNAV TNTADYLASI
601: NNVADAGIDV NSDLQLAIAL QQQEFEDQSP RSNPTPQPTS VAASRLVTGP QVPRSSHRPS SAASSRHDGK SPKDKDSKCR IM