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AT4G11850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:16618929 (2006): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phospholipase D gamma 1
Curator
Summary (TAIR10)
phospholipase D (gamma)
Computational
Description (TAIR10)
phospholipase D gamma 1 (PLDGAMMA1); FUNCTIONS IN: phospholipase D activity, protein binding, phosphatidylinositol-4,5-bisphosphate binding; INVOLVED IN: defense response to bacterium, incompatible interaction, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D gamma 3 (TAIR:AT4G11840.1); Has 2106 Blast hits to 1666 proteins in 402 species: Archae - 0; Bacteria - 529; Metazoa - 440; Fungi - 441; Plants - 536; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G11850-MONOMERBioCyc:MetaCyc:AT4G11850-MONOMERBioGrid:12089BRENDA:3.1.4.4EC:3.1.4.4eggNOG:COG1502eggNOG:KOG1329
EMBL:AF027408EMBL:AL078606EMBL:AL161532EMBL:AY099569EMBL:BT002140EMBL:CP002687EnsemblPlants:AT4G11850
EnsemblPlants:AT4G11850.1entrez:826791Gene3D:2.60.40.150GeneID:826791Genevisible:Q9T053GO:GO:0004630GO:GO:0005509
GO:GO:0005546GO:GO:0005737GO:GO:0005886GO:GO:0006643GO:GO:0006979GO:GO:0009793GO:GO:0010044
GO:GO:0016042GO:GO:0046470GO:GO:0070290Gramene:AT4G11850.1HOGENOM:HOG000240112InParanoid:Q9T053IntAct:Q9T053
InterPro:IPR000008InterPro:IPR001736InterPro:IPR011402InterPro:IPR024632iPTMnet:Q9T053KEGG:00564+3.1.4.4KEGG:00565+3.1.4.4
KEGG:ath:AT4G11850KO:K01115OMA:RMRLYQMPaxDb:Q9T053Pfam:PF00168Pfam:PF00614Pfam:PF12357
Pfam:Q9T053Pfscan:PS50004Pfscan:PS50035PhylomeDB:Q9T053PIR:T09344PIRSF:PIRSF036470PRIDE:Q9T053
PRO:PR:Q9T053PROSITE:PS50004PROSITE:PS50035ProteinModelPortal:Q9T053Proteomes:UP000006548RefSeq:NP_192922.1SMART:SM00155
SMART:SM00239SMR:Q9T053STRING:3702.AT4G11850.1SUPFAM:SSF49562SUPFAM:SSF56024TAIR:AT4G11850tair10-symbols:MEE54
tair10-symbols:PLDGAMMA1UniGene:At.20523UniProt:Q9T053
Coordinates (TAIR10) chr4:-:7129352..7132937
Molecular Weight (calculated) 95593.30 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.34
Length 858 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYHPAYTET MSMGGGSSHG GGQQYVPFAT SSGSLRVELL HGNLDIWVKE AKHLPNMDGF HNRLGGMLSG LGRKKVEGEK SSKITSDPYV TVSISGAVIG
101: RTFVISNSEN PVWMQHFDVP VAHSAAEVHF VVKDSDIIGS QIMGAVGIPT EQLCSGNRIE GLFPILNSSG KPCKQGAVLG LSIQYTPMER MRLYQMGVGS
201: GNECVGVPGT YFPLRKGGRV TLYQDAHVDD GTLPSVHLDG GIQYRHGKCW EDMADAIRQA RRLIYITGWS VFHPVRLVRR TNDPTEGTLG ELLKVKSQEG
301: VRVLVLVWDD PTSRSLLGFK TQGVMNTSDE ETRRFFKHSS VQVLLCPRSG GKGHSFIKKS EVGTIYTHHQ KTVIVDAEAA QNRRKIVAFV GGLDLCNGRF
401: DTPKHPLFRT LKTLHKDDFH NPNFVTTADD GPREPWHDLH SKIDGPAAYD VLANFEERWM KASKPRGIGK LKSSSDDSLL RIDRIPDIVG LSEASSANDN
501: DPESWHVQVF RSIDSSSVKG FPKDPKEATG RNLLCGKNIL IDMSIHAAYV KAIRSAQHFI YIENQYFLGS SFNWDSNKDL GANNLIPMEI ALKIANKIRA
601: REKFAAYIVI PMWPEGAPTS NPIQRILYWQ HKTMQMMYQT IYKALVEVGL DSQFEPQDFL NFFCLGTREV PVGTVSVYNS PRKPPQPNAN ANAAQVQALK
701: SRRFMIYVHS KGMVVDDEFV LIGSANINQR SLEGTRDTEI AMGGYQPHYS WAMKGSRPHG QIFGYRMSLW AEHLGFLEQG FEEPENMECV RRVRQLSELN
801: WRQYAAEEVT EMSGHLLKYP VQVDRTGKVS SLPGCETFPD LGGKIIGSFL ALQENLTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)