AT4G11820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
HYDROXYMETHYLGLUTARYL-COA SYNTHASE (HMGS); CONTAINS InterPro DOMAIN/s: Hydroxymethylglutaryl-coenzyme A synthase C-terminal (InterPro:IPR013746), Thiolase-like (InterPro:IPR016039), Hydroxymethylglutaryl-coenzyme A synthase, N-terminal (InterPro:IPR013528), Hydroxymethylglutaryl-CoA synthase, eukaryotic (InterPro:IPR010122), Hydroxymethylglutaryl-coenzyme A synthase, active site (InterPro:IPR000590); Has 2141 Blast hits to 2138 proteins in 847 species: Archae - 222; Bacteria - 1037; Metazoa - 301; Fungi - 182; Plants - 116; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7109124..7111213 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 45207.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.23 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||
| Length | 406 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSFNAVTSLF EKYKIDPNQI GRLEVGSETV IDKSKSIKTF LMQLFEKCGN TDVEGVDSTN ACYGGTAALL NCVNWVESNS WDGRYGLVIC TDSAVYAEGP 101: ARPTGGAAAI AMLIGPDAPI VFESKLRASH MAHVYDFYKP NLASEYPVVD GKLSQTCYLM ALDSCYKHLC NKFEKIEGKE FSINDADYIV FHSPYNKLVQ 201: KSFARLLYND FLRNASSIDE AAKEKFTPYS SLTLDESYQS RDLEKVSQQI AKPFYDAKVQ PTTLIPKEVG NMYTASLYAA FASLIHKKHN DLAGKRVVMF 301: SYGSGSTATM FSLRLNDNKP PFSISNIASV MDVGGKLKAR HEYAPEKFVE TMKLMEHRYG AKDFVTTKEG IIDLLAPGTY YLKEVDSLYR RFYGKKGEDG 401: SVANGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)