AT4G11740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.683 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Isolated as a suppressor of a dominant mutant in the Ara4 gene that was expressed in yeast ypt1 mutant strains. A novel protein with a small region of similarity to coil-coiled domain of yeast VSP27 protein. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SAY1; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G23040.1); Has 5504 Blast hits to 4000 proteins in 512 species: Archae - 3; Bacteria - 644; Metazoa - 2099; Fungi - 780; Plants - 360; Viruses - 48; Other Eukaryotes - 1570 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:7071955..7075256 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62352.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 564 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATPNQEAID TFISITGASD AVALQKLEEH RGDLNQAVNA YFSEGDRNVV REAPVNDDDE MDIDDVIPAP QSPLSMFNAA RTIGRPPFSL LDSDFARRVF 101: DSDPLMPRPP FVSHPREVRQ IPIEVKDSSG PSGRSSDAPT IEDVTETAHV QGPVTTQGTV IIDEESDDDI PFAPMGRSRQ DRPAGSVANN NNQDYNDIEE 201: EMIRAAIEAS KKEAEGSSNP LLEERPLHME DDDDIAIAVT MSLKSAEEEV LRSQGYKAST SEIGASAVTA AQGPQDTQAL NGRLAAPSSP FDDDSDDVDE 301: QPLVRHRPRR AASGSLAPPN ADRSRSGSPE EEHASINPAE RGSGFPSEWG GISSEEHDEA VMLEAAMFGG IPETGYNHLP FLPPQPRAQP RPPSPSLTAQ 401: RLIREQQDDE YVASLQADRD KEMKSIRDAE ARQLEEETAR KAFLEEEKKK EEEAQRKLEE EQELERQLDA KEASLPKEPQ ADEENAITLL IRMPDGTRRG 501: RRFLKSDKLQ TLFNFIDIAR VVKPNTYRLV RPYPRHAFGD GESESTLNDL GLTSKQEALF LELI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)