AT4G11670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF810) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT5G06970.1); Has 193 Blast hits to 179 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 8; Plants - 166; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7044401..7052971 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 126706.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.23 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||
| Length | 1117 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSLLQRYRN DRRKLMEFLM SSGLVKELRS PSGSPTSLSP ADLDALSADY VLDCVKSGGV VDVSKGREKY NFDSSYPVTI HSESGDSYFL VSSPDLAGSP 0101: PHRMPPPPVN IEKSSNNGAD MSRHMDSSNT PSARDNYVFK EETPDIKPVK PIKIIPLGLP PLRTGLSDDD LREAAYELMI ASMLLSSFLT NSVEAYPTHR 0201: RKIEKSSRLM LSLKRKDKPH LQPQISNTHS EISSKMDTCI RRNLVQLATL RTGEQIDLPQ LALGLLVGIF KSDFPNEKLY MKWKTRQANL LEEVLCFSPS 0301: LEKNERATMR KCLATIRDSK EWDVVVSASL RIEVLSSIRQ VASKLSSLPG RCGIEEETYY WTAIYHLNIR LYEKLLFGVF DTLDEGQVIE DASSMLFHMK 0401: SIWSTLGITE NLHSAIYGWV LFQQFVCTGE PSLLGSTIQE LQKVTSAESG NPKEDLYLSH LVCSRQTIGT DIHLGLVKAI LTSVSAWCDD KLQDYHLHFG 0501: KKPRDFGMLV RLASTVGLPP ADCTRTELIK LDTLSDDVSD KIQSYVQNSI KGACARAAHF AYVKSHGERT HALALLANEL TVIAKVEINE FVPVFSKWLP 0601: ECMMISAMLL HRFYGERLTP FLEGVSSLSG DVRKVVPAAY MLQEELTQLY NCHSKSKLRK PYFHKLKNYE IEKAVKPVML DWLISQHDHI LQWTRRAFEI 0701: EEWEPLSVQQ RHAASIVEIF RIIEETVSQL FGLHLPVDIT HLQALLSLIY HSLDTYLQRV FDQLVDKKFL YPSAPPLTRF TENVMPVMKR KSLEFSEPDN 0801: KIVKKLDELT IPKLCIILNT LCYIQKQISA TEVGIRKSLT LVEASLNKRS EIETDEAEVE NSLTHSEAVD ELFATTYDSL RDTNANCITK TRDLIVLWQK 0901: YAFLFYWLIL MDEKCNAQVL DTVCSLSYED SRDMVVLSIC RSALEAYVRV LLDGGPTRAF SDSDITLMEE DLSILKEFFI ADGEGLPRSL VEQEAKQAKE 1001: ILDLYSLESD MLIQMLMTAS ELINMGVSSE QRRLEDAQTL VRVLCHKKDR NASKFLKRQY ELPMSTEYED VTLNLPALSE IVRSTSTHWS TASQNSFSSI 1101: KKKIQEATSE IRNNSGW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)