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AT4G11660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : winged-helix DNA-binding transcription factor family protein
Curator
Summary (TAIR10)
member of Heat Stress Transcription Factor (Hsf) family
Computational
Description (TAIR10)
AT-HSFB2B; FUNCTIONS IN: transcription repressor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor B2A (TAIR:AT5G62020.1); Has 32476 Blast hits to 10764 proteins in 847 species: Archae - 36; Bacteria - 10454; Metazoa - 9035; Fungi - 1651; Plants - 6330; Viruses - 666; Other Eukaryotes - 4304 (source: NCBI BLink).
Protein Annotations
BioGrid:12069eggNOG:COG5169eggNOG:KOG0627EMBL:AJ251868EMBL:AL049500EMBL:AL161532EMBL:AY093206
EMBL:BT008471EMBL:CP002687EnsemblPlants:AT4G11660EnsemblPlants:AT4G11660.1entrez:826771Gene3D:1.10.10.10GeneID:826771
Genevisible:Q9T0D3GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0010200GO:GO:0043565GO:GO:0045892
Gramene:AT4G11660.1hmmpanther:PTHR10015hmmpanther:PTHR10015:SF169HOGENOM:HOG000242480InParanoid:Q9T0D3InterPro:IPR000232InterPro:IPR011991
InterPro:IPR027725iPTMnet:Q9T0D3KEGG:ath:AT4G11660KO:K09419ncoils:CoilOMA:HPWPIYRPANTHER:PTHR10015
PaxDb:Q9T0D3Pfam:PF00447Pfam:Q9T0D3PhylomeDB:Q9T0D3PIR:T04213PRIDE:Q9T0D3PRINTS:PR00056
PRO:PR:Q9T0D3PROSITE:PS00434ProteinModelPortal:Q9T0D3Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371511Reactome:R-ATH-3371568
Reactome:R-ATH-3371571RefSeq:NP_192903.1scanprosite:PS00434SMART:SM00415SMR:Q9T0D3STRING:3702.AT4G11660.1SUPFAM:SSF46785
TAIR:AT4G11660tair10-symbols:AT-HSFB2Btair10-symbols:HSFB2BUniGene:At.24995UniProt:Q9T0D3
Coordinates (TAIR10) chr4:+:7043006..7044227
Molecular Weight (calculated) 39707.30 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.44
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MPGEQTGETP TVAGVGGGGA GCSAGNSGGS SGCGAGGGGG GSGGGGGGGG DSQRSIPTPF LTKTYQLVED PVYDELISWN EDGTTFIVWR PAEFARDLLP
101: KYFKHNNFSS FVRQLNTYGF RKVVPDRWEF SNDCFKRGEK ILLRDIQRRK ISQPAMAAAA AAAAAAVAAS AVTVAAVPVV AHIVSPSNSG EEQVISSNSS
201: PAAAAAAIGG VVGGGSLQRT TSCTTAPELV EENERLRKDN ERLRKEMTKL KGLYANIYTL MANFTPGQED CAHLLPEGKP LDLLPERQEM SEAIMASEIE
301: TGIGLKLGED LTPRLFGVSI GVKRARREEE LGAAEEEDDD RREAAAQEGE QSSDVKAEPM EENNSGNHNG SWLELGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)