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AT4G11600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:23444301 (2013): mitochondrion
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
  • PMID:15276431 (2004): mitochondrion
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutathione peroxidase 6
Curator
Summary (TAIR10)
Encodes glutathione peroxidase.
Computational
Description (TAIR10)
glutathione peroxidase 6 (GPX6); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to salt stress, response to metal ion; LOCATED IN: cytosol, mitochondrion, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: glutathione peroxidase 7 (TAIR:AT4G31870.1); Has 7601 Blast hits to 7600 proteins in 1766 species: Archae - 2; Bacteria - 3728; Metazoa - 790; Fungi - 210; Plants - 383; Viruses - 8; Other Eukaryotes - 2480 (source: NCBI BLink).
Protein Annotations
BioGrid:12064EC:1.11.1.12eggNOG:COG0386eggNOG:KOG1651EMBL:AB001568EMBL:AF030132EMBL:AL049500
EMBL:AL161532EMBL:AY039863EMBL:AY077655EMBL:AY088647EMBL:CP002687EnsemblPlants:AT4G11600EnsemblPlants:AT4G11600.1
entrez:826765Gene3D:3.40.30.10GeneID:826765Genevisible:O48646GO:GO:0004602GO:GO:0005739GO:GO:0005829
GO:GO:0005886GO:GO:0006979GO:GO:0009507GO:GO:0009651GO:GO:0046686GO:GO:0047066GO:GO:0048046
GO:GO:0098869Gramene:AT4G11600.1gramene_pathway:1.11.1.12gramene_pathway:1.11.1.9gramene_pathway:PWY-4081gramene_plant_reactome:1119437gramene_plant_reactome:6876547
hmmpanther:PTHR11592hmmpanther:PTHR11592:SF42HOGENOM:HOG000277054InParanoid:O48646IntAct:O48646InterPro:IPR000889InterPro:IPR012336
InterPro:IPR029759InterPro:IPR029760iPTMnet:O48646KEGG:ath:AT4G11600KO:K00432OMA:PGNEGAIPANTHER:PTHR11592
PaxDb:O48646PeroxiBase:2502Pfam:O48646Pfam:PF00255Pfscan:PS51355PhylomeDB:O48646PIR:T04207
PRIDE:O48646PRINTS:PR01011PRO:PR:O48646PROSITE:PS00460PROSITE:PS00763PROSITE:PS51355ProteinModelPortal:O48646
Proteomes:UP000006548Reactome:R-ATH-2142712RefSeq:NP_192897.2scanprosite:PS00460scanprosite:PS00763SMR:O48646STRING:3702.AT4G11600.1
SUPFAM:SSF52833TAIR:AT4G11600tair10-symbols:ATGPX6tair10-symbols:GPX6tair10-symbols:LSC803tair10-symbols:PHGPXUniGene:At.23184
UniProt:O48646
Coordinates (TAIR10) chr4:-:7010021..7011330
Molecular Weight (calculated) 25585.50 Da
IEP (calculated) 9.86
GRAVY (calculated) -0.28
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)