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AT4G11570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.978
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT3G10970.1); Has 9886 Blast hits to 9886 proteins in 1971 species: Archae - 106; Bacteria - 8631; Metazoa - 63; Fungi - 26; Plants - 330; Viruses - 0; Other Eukaryotes - 730 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0637eggNOG:KOG2914EMBL:AL050399EMBL:AL161532EMBL:AY058171EMBL:AY098974EMBL:BT000932
EMBL:CP002687EnsemblPlants:AT4G11570EnsemblPlants:AT4G11570.1EnsemblPlants:AT4G11570.2entrez:826761Gene3D:3.40.50.1000GeneID:826761
GO:GO:0016787Gramene:AT4G11570.1Gramene:AT4G11570.2gramene_pathway:2.7.1.26gramene_pathway:2.7.7.2gramene_pathway:RIBOSYN2-PWYhmmpanther:PTHR18901
hmmpanther:PTHR18901:SF4HOGENOM:HOG000240952InterPro:IPR006439InterPro:IPR023214KEGG:ath:AT4G11570OMA:ERQAWLTPfam:PF13419
PhylomeDB:Q9LDD5PIR:T10577Proteomes:UP000006548RefSeq:NP_192894.1RefSeq:NP_849359.1SMR:Q9LDD5STRING:3702.AT4G11570.1
SUPFAM:SSF56784TAIR:AT4G11570TIGRfam:TIGR01509TIGRFAMs:TIGR01509UniGene:At.3349UniGene:At.67288UniProt:Q9LDD5
Coordinates (TAIR10) chr4:+:7004743..7005864
Molecular Weight (calculated) 42205.90 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.38
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEAIGAVSL VGHRPSIVRI TVKNELKTQK SQSIVRFPVK VDYSAKGVLS HLMTQSVKKN RMSVFPIRAL AMELTKEKKK DDRLPKTWNY LDSGADDKPS
101: LWPPENKADK PSLHNPLLRQ ERMGCGWLGA IFEWEGVLIE DNPDLDNQSW LTLAQEEGKS PPPAFMLRRV EGMKNEQAIS EVLCWSRDPV QVRRMAKRKE
201: EIFKALHGGV YRLRDGSQEF VNVLMNNKIP MALVSTRPRE TLENAVGSIG IRKFFSVIVA SEDVYRGKPD PEMFIYAAQL LDFIPERCIV FGNSNQTIEA
301: AHDGRMKCVA VASKHPIYEL GAAELVVRRL DELSIIDLKK LADTDLTEFE PELEMEKEDE RELPSSAVAV DDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)