AT4G11560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : bromo-adjacent homology (BAH) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: Bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT2G25120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7000095..7003445 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66461.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.99 | ||||||||||||||||||||||||||||||||||||||||
| Length | 587 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLSRRFAQV SSDEEDDVPI TRSKGRNSAS PEESLGKRRK RKTVKLYEDF EEKEADRKKK RKGNKEDEDM AEGDDDQAEE ETNPEAEEEE DEEEEEKPDD 101: ACPVGDSVNV TGKGKGKRTH FNQFAYDGNT YDLEVPVLLV PEDKSQKPYV AIIKDITQTK DGSMMILGQW FYRPEEAEKR GGGNWQSSDT RELFYSFHRD 201: EVPAESVMHR CVVYFVPAHK QLPKRKNNPG FIVRKVYDTV EKKLWKLTDK DYEDSKQREI DVLVKKTMNV LGDLPDLESE DMLVDQENVL KAKRSFRKVN 301: ISPVDVRREE DASLKAETPG SGAGISSEHY AILEKFDSLT GDAHRDKCLG KLLEAVQHIC YIPENKQAGD EAKVGSDASH LEQDEKDTKP ENGKDEKFLW 401: PDAAVPQVCA LENASHASLA SDFQKYNQKM RTLVFNLKNT ALLARRLLNG ELEPATILNM SPTELKEGLT ADETTKKEPD DADRMQMTSV RCSRCSQLTV 501: GLRDIIQAGH GDRYQLECVD CGYSWYASRD EVSTLTIVTD KPAQGTEKED IEKNLTSPRE TNKPKDEALK TNDSNADNNP EASKKPE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)