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AT4G11420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : eukaryotic translation initiation factor 3A
Curator
Summary (TAIR10)
Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits.
Computational
Description (TAIR10)
eukaryotic translation initiation factor 3A (EIF3A); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23330.1); Has 151795 Blast hits to 76455 proteins in 3156 species: Archae - 1231; Bacteria - 22686; Metazoa - 70860; Fungi - 11049; Plants - 6472; Viruses - 438; Other Eukaryotes - 39059 (source: NCBI BLink).
Protein Annotations
BioGrid:12045eggNOG:ENOG410XQ37eggNOG:KOG2072EMBL:AF291711EMBL:AL050399EMBL:AL161531EMBL:CP002687
EnsemblPlants:AT4G11420EnsemblPlants:AT4G11420.1entrez:826746ExpressionAtlas:Q9LD55Gene3D:1.10.10.10GeneID:826746Genevisible:Q9LD55
GO:GO:0001731GO:GO:0003743GO:GO:0005829GO:GO:0005852GO:GO:0005886GO:GO:0006413GO:GO:0006446
GO:GO:0016282GO:GO:0033290Gramene:AT4G11420.1HAMAP:MF_03000hmmpanther:PTHR14005HOGENOM:HOG000246822InParanoid:Q9LD55
IntAct:Q9LD55InterPro:IPR000717InterPro:IPR011991InterPro:IPR027512iPTMnet:Q9LD55KEGG:ath:AT4G11420KO:K03254
MINT:MINT-7980004ncoils:CoilOMA:AREDSWGPaxDb:Q9LD55Pfam:PF01399Pfam:Q9LD55PhylomeDB:Q9LD55
PIR:T10562PRIDE:Q9LD55PRO:PR:Q9LD55ProteinModelPortal:Q9LD55Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-72689
Reactome:R-ATH-72695Reactome:R-ATH-72702RefSeq:NP_192881.1SMART:SM00088SMR:Q9LD55STRING:3702.AT4G11420.1SwissPalm:Q9LD55
TAIR:AT4G11420tair10-symbols:ATEIF3A-1tair10-symbols:ATTIF3A1tair10-symbols:EIF3Atair10-symbols:EIF3A-1tair10-symbols:TIF3A1UniGene:At.24381
UniProt:Q0WW10UniProt:Q9LD55
Coordinates (TAIR10) chr4:-:6947834..6952053
Molecular Weight (calculated) 114306.00 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.79
Length 987 amino acids
Sequence (TAIR10)
(BLAST)
001: MANFAKPENA LKRADELINV GQKQDALQAL HDLITSKRYR AWQKPLEKIM FKYLDLCVDL KRGRFAKDGL IQYRIVCQQV NVSSLEEVIK HFLHLATDKA
101: EQARSQADAL EEALDVDDLE ADRKPEDLQL SIVSGEKGKD RSDRELVTPW FKFLWETYRT VLEILRNNSK LEALYAMTAH KAFQFCKQYK RTTEFRRLCE
201: IIRNHLANLN KYRDQRDRPD LSAPESLQLY LDTRFDQLKV ATELGLWQEA FRSVEDIYGL MCMVKKTPKS SLLMVYYSKL TEIFWISSSH LYHAYAWFKL
301: FSLQKNFNKN LSQKDLQLIA SSVVLAALSI PPFDRAQSAS HMELENEKER NLRMANLIGF NLEPKFEGKD MLSRSALLSE LVSKGVLSCA SQEVKDLFHV
401: LEHEFHPLDL GSKIQPLLEK ISKSGGKLSS APSLPEVQLS QYVPSLEKLA TLRLLQQVSK IYQTIRIESL SQLVPFFQFS EVEKISVDAV KNNFVAMKVD
501: HMKGVVIFGN LGIESDGLRD HLAVFAESLS KVRAMLYPVP SKASKLAGVI PNLADTVEKE HKRLLARKSI IEKRKEDQER QQLEMEREEE QKRLKLQKLT
601: EEAEQKRLAA ELAERRKQRI LREIEEKELE EAQALLEETE KRMKKGKKKP LLDGEKVTKQ SVKERALTEQ LKERQEMEKK LQKLAKTMDY LERAKREEAA
701: PLIEAAYQRR LVEEREFYER EQQREVELSK ERHESDLKEK NRLSRMLGNK EIFQAQVISR RQAEFDRIRT EREERISKII REKKQERDIK RKQIYYLKIE
801: EERIRKLQEE EEARKQEEAE RLKKVEAERK ANLDKAFEKQ RQREIELEEK SRREREELLR GTNAPPARLA EPTVTPVGTT APAAAAAAAG APAAPYVPKW
901: KRQTTEVSGP SAPTSSETDR RSNRGPPPGD DHWGSNRGAA QNTDRWTSNR ERSGPPAEGG DRWGSGPRGS DDRRSTFGSS RPRPTQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)