suba logo
AT4G11410.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.934
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G23430.2); Has 42058 Blast hits to 41993 proteins in 2806 species: Archae - 320; Bacteria - 26803; Metazoa - 3444; Fungi - 2870; Plants - 1627; Viruses - 0; Other Eukaryotes - 6994 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G11410-MONOMEReggNOG:COG1028eggNOG:KOG1208EMBL:AL050399EMBL:AL161531EMBL:CP002687EnsemblPlants:AT4G11410
EnsemblPlants:AT4G11410.1entrez:826745Gene3D:3.40.50.720GeneID:826745GO:GO:0016491Gramene:AT4G11410.1hmmpanther:PTHR24320
hmmpanther:PTHR24320:SF71InterPro:IPR002347InterPro:IPR016040KEGG:ath:AT4G11410OMA:ITNILRYPfam:PF00106PhylomeDB:Q9LDY7
PIR:T10561PRINTS:PR00081Proteomes:UP000006548Reactome:R-ATH-2453902Reactome:R-ATH-5365859RefSeq:NP_192880.1SMR:Q9LDY7
STRING:3702.AT4G11410.1SUPFAM:SSF51735TAIR:AT4G11410UniGene:At.33571UniProt:Q9LDY7
Coordinates (TAIR10) chr4:-:6945127..6947186
Molecular Weight (calculated) 34805.50 Da
IEP (calculated) 7.32
GRAVY (calculated) -0.22
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MWPFWWKGAS GFSARSTAEE VTHGIDGTGL TAIVTGASSG IGEETTRVLA LRGVHVVMAV RNTDSGNQVR DKILKEIPQA KIDVMKLDLS SMASVRSFAS
101: EYQSLDLPLN LLINNAGIMA CPFLLSSDNI ELQFATNHLG HFLLTNLLLE RMKKTASESN REGRIVIVSS EGHRFAYREG VQFDKINDEA RYNTLQAYGQ
201: SKLGNILHAT ELARLFKEQG VNITANSLHP GSIMTNLLRY HSFINTIGNA VGKYVLKSIP QGAATTCYAA LHPQAKGVSG EYLMDNNISD PNSQGKDKDL
301: AKKLWEFSLR LTGEEES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)