suba logo
AT4G11300.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.681
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF793)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT4G23530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSFSeggNOG:ENOG41108UQEMBL:AK221630EMBL:AL096882EMBL:AL161531EMBL:BT025658EMBL:CP002687
EnsemblPlants:AT4G11300EnsemblPlants:AT4G11300.1entrez:826732GeneID:826732Gramene:AT4G11300.1hmmpanther:PTHR31509hmmpanther:PTHR31509:SF7
InterPro:IPR008511KEGG:ath:AT4G11300ncoils:CoilOMA:ICRKMEDPfam:PF05633PhylomeDB:Q9SUT1PIR:T13021
Proteomes:UP000006548RefSeq:NP_192869.1TAIR:AT4G11300UniGene:At.33576UniProt:Q9SUT1
Coordinates (TAIR10) chr4:-:6872345..6873460
Molecular Weight (calculated) 40862.10 Da
IEP (calculated) 6.42
GRAVY (calculated) -0.30
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPATEHQSS FLSRLSRRNQ VVSMEVNHEQ EQEELEDFQK HVAERFAELL PPSDSPESYP ILSIQWLRKL LDVFMSIESE FHSVLTSNPS QISKPPLDKL
101: VPEMLDRIVK ALDICTAVVN GVDSVRQIQR CAEIAVTALK QTPLSDGSVR RAKRALTSLL AALNADKNSG SSGGGSGRRS STDQWSSFGR RSGGSSGGGG
201: GGAGCVSKNW SAAKQIQAMT ANLVAPRGGE ASPMYIMSSV MVMVMWTLVV AVPCQTSNGL MVHVPLPKNQ VWANAAVSIS ERVGEEMKRK ETRGGGLMEE
301: MQRMERIGLK LMEFSEGFRF NGEEDVVAEV AEMEEICRKM EDGLEGLQRR VREVFHRLVK SRSEILEVID H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)