AT4G11270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6854461..6859490 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 159385.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.06 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1446 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKCRSVACLW SRAPPSHRVT ATASLTNPPT LYTGGSDGSI IWWSISSSSE SNSVTRLPHH EIKPIAMLCG HTSPIVDLAI CDPTILSSNG VVASDNGNAD 0101: PFVNCCALIS ACTDGVLCVW SRSSGQCRKR RKLPPWVGSP SILSTLPSEP RYVCVGCSYI DVDGAETLAD TDFQKSRCTV VVVDTYTLTI VHTVFHGNLS 0201: IGCLNFMGVV QLDEQESLLM ADSFGRLQLV SVSEKSEPSK GSLVSRNWLS EGEIAVSVIT RGDLVAFFSK SRCVFWLLNR EEAIGEISFV DDSHSSNFLF 0301: KEAMILYSST STIEGDKDDS ISETFVLWDG SGSAVLFTMS YIDGEFTYKN FGEIVTAPDD KRSVKSTFCF VQLRQNLLRV ESSCCDVEQP SQWRPHITIW 0401: SLCLGNGKEK ELQRKVLGES SYFADWISSS CLDPKGSVSA ETGTSQSGSQ CSAKNDLQSF VSDNGQCVSS SMVISENMYV PYAVVYGFFS GEIEIAKFDF 0501: LHGIDSPASS PRSDTDPLVY KQRLLGHTGS VLCLAAHRMF GDANGCNSSH VLISGSMDCT IRIWDLESGN VIMIMHHHVA PVRQIILSPA PTKRPWSKCF 0601: LSVGDDSCVA LSSLETLRVE RMFPGHPNYP TKVVWDGTRG YIACLFRSLS RKSDPIDVLY IWDVKTGARE RVLHGAASHS MFDHFCAGIS EKSHSGTVLN 0701: GNTSVSSLLF PVDEERKPFY LKNYERAASL STSKPSSSQE KTREESSTAS SFLQSIRYPS IKCTCPFPGI STLIFDLSSL AVYCQTHEDS DMHKMLEEKS 0801: DKATAQQKTS KDKSPVQKTL DNHAEVVHMD KAIGEYLIRF SLSFLHLWGI DFELDQMLVA HLKLKRPESF IVTSGLQGDK GSLTLAFPGL NATLELWKSS 0901: SEFTALRSVI MVSLAQCMIS LSHSTATYSS NLAAFYTRNL AEKYPDLKPP LLQLLVTFWQ DNSEQVRMAA RSLFHHTASL AIPLPLCSDH ASEHAELVRS 1001: LSGISLNEPK VLSTGEEYPT NSLDSEHIHQ AQRLSQAEES EILSWLESFE MQDWISCVGG TSQDAMAAHI IVAAALSIWY PSLVKPGLAM LVVHKLLNLV 1101: MAMSEKYSST AAELLSEGME TTWKTWIGPD IPRIVSDIFF QIECVSSSVG AYQVVPSSIK ETLVEVLLPS LAMADVLGFL SIIESQIWST ASDSPVHVVS 1201: LRTLIRIIRA APRNLVLHLE KAVNFVLQTM DPSNTVMRKT CLQTSMATLR EVVRVFPMVI LNDSSTRLAI GDVITEINNA CIHIYDMRSM TKIRVLDASG 1301: PPGLPNFLRG ASESAVTTAI SALSFSPDGE GLVAFSENGL MIRWWSLGSV WWEKLSQSLT PIQCTKLIFI HPWDGFSSSS SRTSVISSIS NDEQELPLQE 1401: TAKNISHVER LKQLVQHLDL SYRLEWASER KVVLTRHNVE LGTCLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)