suba logo
AT4G11260.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phosphatase-related
Curator
Summary (TAIR10)
Functions in plant disease resistance signaling, SCF(TIR1) mediated degradation of Aux/IAA proteins and HSP90 mediated degradation of R resistance proteins. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance.
Computational
Description (TAIR10)
SGT1B; FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), Tetratricopeptide-like helical (InterPro:IPR011990), SGS (InterPro:IPR007699), Tetratricopeptide repeat-containing (InterPro:IPR013026), HSP20-like chaperone (InterPro:IPR008978), Tetratricopeptide repeat (InterPro:IPR019734), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: phosphatase-related (TAIR:AT4G23570.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:12027DIP:DIP-41227NDNASU:826728eggNOG:COG5091eggNOG:KOG0376eggNOG:KOG1309EMBL:AF370229
EMBL:AF428340EMBL:AF439976EMBL:AJ318019EMBL:AL096882EMBL:AL161531EMBL:AY085464EMBL:AY150487
EMBL:CP002687EnsemblPlants:AT4G11260EnsemblPlants:AT4G11260.1entrez:826728Gene3D:1.25.40.10Gene3D:2.60.40.790GeneID:826728
Genevisible:Q9SUT5GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006511GO:GO:0009408GO:GO:0009734
GO:GO:0009867GO:GO:0010187GO:GO:0019005GO:GO:0030163GO:GO:0045087GO:GO:0050832GO:GO:2000072
Gramene:AT4G11260.1hmmpanther:PTHR22904hmmpanther:PTHR22904:SF344HOGENOM:HOG000248210InParanoid:Q9SUT5IntAct:Q9SUT5InterPro:IPR007052
InterPro:IPR007699InterPro:IPR008978InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT4G11260KO:K12795
MINT:MINT-232468OMA:LHWTSLEPaxDb:Q9SUT5Pfam:PF00515Pfam:PF04969Pfam:PF05002Pfam:PF13181
Pfam:PF13414Pfam:Q9SUT5Pfscan:PS50005Pfscan:PS50293Pfscan:PS51048Pfscan:PS51203PhylomeDB:Q9SUT5
PIR:T13017PRIDE:Q9SUT5PRO:PR:Q9SUT5PROSITE:PS50005PROSITE:PS50293PROSITE:PS51048PROSITE:PS51203
ProteinModelPortal:Q9SUT5Proteomes:UP000006548Reactome:R-ATH-844456RefSeq:NP_192865.1SMART:SM00028SMR:Q9SUT5STRING:3702.AT4G11260.1
SUPFAM:SSF48452SUPFAM:SSF49764TAIR:AT4G11260tair10-symbols:ATSGT1Btair10-symbols:EDM1tair10-symbols:ETA3tair10-symbols:RPR1
tair10-symbols:SGT1BUniGene:At.23379UniProt:Q9SUT5
Coordinates (TAIR10) chr4:-:6851515..6853719
Molecular Weight (calculated) 39764.30 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.46
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)