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AT4G11220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.980
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : VIRB2-interacting protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VIRB2-interacting protein 2 (BTI2); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 1 (TAIR:AT4G23630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:12023eggNOG:ENOG410XPKHeggNOG:KOG1792EMBL:AL096882EMBL:AL161531EMBL:AY034901EMBL:AY048273
EMBL:AY057606EMBL:AY086294EMBL:BT002368EMBL:CP002687EnsemblPlants:AT4G11220EnsemblPlants:AT4G11220.1entrez:826724
GeneID:826724Genevisible:Q9SUT9GO:GO:0005783GO:GO:0005789GO:GO:0005794GO:GO:0005886GO:GO:0071458
GO:GO:0071782GO:GO:0071786Gramene:AT4G11220.1hmmpanther:PTHR10994hmmpanther:PTHR10994:SF78HOGENOM:HOG000237479InParanoid:Q9SUT9
IntAct:Q9SUT9InterPro:IPR003388KEGG:ath:AT4G11220OMA:HEESSPNPaxDb:Q9SUT9Pfam:PF02453Pfam:Q9SUT9
Pfscan:PS50845PhylomeDB:Q9SUT9PIR:T13013PRIDE:Q9SUT9PRO:PR:Q9SUT9PROSITE:PS50845ProteinModelPortal:Q9SUT9
Proteomes:UP000006548RefSeq:NP_192861.1SMR:Q9SUT9STRING:3702.AT4G11220.1TAIR:AT4G11220tair10-symbols:BTI2tair10-symbols:RTNLB2
TMHMM:TMhelixUniGene:At.3649UniProt:Q9SUT9
Coordinates (TAIR10) chr4:-:6838176..6839578
Molecular Weight (calculated) 30281.90 Da
IEP (calculated) 8.93
GRAVY (calculated) -0.14
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)