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AT4G11175.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor IF-1 (InterPro:IPR004368); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:12018eggNOG:COG0361eggNOG:ENOG410J31KEMBL:AF080120EMBL:AK117848EMBL:AK221313EMBL:AL049876
EMBL:AL161531EMBL:BT003712EMBL:CP002687EnsemblPlants:AT4G11175EnsemblPlants:AT4G11175.1entrez:826719Gene3D:2.40.50.140
GeneID:826719Genevisible:O82499GO:GO:0003743GO:GO:0009507Gramene:AT4G11175.1HAMAP:MF_00075hmmpanther:PTHR33370
hmmpanther:PTHR33370:SF1HOGENOM:HOG000113002InParanoid:O82499IntAct:O82499InterPro:IPR004368InterPro:IPR006196InterPro:IPR012340
InterPro:IPR022967KEGG:ath:AT4G11175KO:K02518OMA:KVEMSVYPaxDb:O82499Pfam:O82499Pfam:PF01176
Pfscan:PS50832PhylomeDB:O82499PIR:T01915PIR:T08196PRIDE:O82499PRO:PR:O82499PROSITE:PS50832
ProteinModelPortal:O82499Proteomes:UP000006548RefSeq:NP_192856.1SMART:SM00316SMR:O82499STRING:3702.AT4G11175.1SUPFAM:SSF50249
TAIR:AT4G11175TIGRfam:TIGR00008TIGRFAMs:TIGR00008UniGene:At.43672UniProt:O82499
Coordinates (TAIR10) chr4:+:6818162..6818806
Molecular Weight (calculated) 15734.40 Da
IEP (calculated) 10.77
GRAVY (calculated) -0.24
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MLQLCSTFRP QLLLPCQFRF TNGVLIPQIN YVASNSVVNI RPMIRCQRAS GGRGGANRSK PAKPQVKEGS NKTVIEGLVT ESLPNGMFRV DLENGDNILG
101: YICGKIRKNF IRILPGDKVK VEMSVYDSTK GRIIFRMSSR D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)