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AT4G11150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.500
vacuole 0.500
ASURE: golgi,vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:19288221 (2010): plastid
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plant-type vacuole
  • PMID:15734919 (2005): cytosol
  • PMID:15574830 (2004): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vacuolar ATP synthase subunit E1
Curator
Summary (TAIR10)
Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis.
Computational
Description (TAIR10)
vacuolar ATP synthase subunit E1 (TUF); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: in 7 processes; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 18 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: vacuolar H+-ATPase subunit E isoform 3 (TAIR:AT1G64200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:12015DNASU:826716eggNOG:COG1390eggNOG:KOG1664EMBL:AF080120EMBL:AL049876EMBL:AL161531
EMBL:AY065119EMBL:AY081632EMBL:CP002687EMBL:X92117EnsemblPlants:AT4G11150EnsemblPlants:AT4G11150.1entrez:826716
GeneID:826716Genevisible:Q39258GO:GO:0000325GO:GO:0005773GO:GO:0005774GO:GO:0005794GO:GO:0007030
GO:GO:0009409GO:GO:0009651GO:GO:0009705GO:GO:0009735GO:GO:0009793GO:GO:0009832GO:GO:0015991
GO:GO:0022626GO:GO:0033178GO:GO:0042742GO:GO:0046961Gramene:AT4G11150.1HAMAP:MF_00311hmmpanther:PTHR12317
hmmpanther:PTHR12317:SF18HOGENOM:HOG000202506InParanoid:Q39258IntAct:Q39258InterPro:IPR002842iPTMnet:Q39258KEGG:ath:AT4G11150
KO:K02150ncoils:CoilOMA:PKSNDPHPaxDb:Q39258Pfam:PF01991Pfam:Q39258PhylomeDB:Q39258
PIR:T01918PRIDE:Q39258PRO:PR:Q39258ProteinModelPortal:Q39258Proteomes:UP000006548Reactome:R-ATH-77387Reactome:R-ATH-917977
RefSeq:NP_192853.1SMR:Q39258STRING:3702.AT4G11150.1SUPFAM:0053834SwissPalm:Q39258TAIR:AT4G11150tair10-symbols:emb2448
tair10-symbols:TUFtair10-symbols:TUFFtair10-symbols:VHA-E1TCDB:3.A.2.2.5UniGene:At.23873UniProt:Q39258World-2DPAGE:0003:Q39258
Coordinates (TAIR10) chr4:+:6800091..6801696
Molecular Weight (calculated) 26061.50 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.49
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MNDGDVSRQI QQMVRFIRQE AEEKANEISV SAEEEFNIEK LQLVEAEKKK IRQDYEKKEK QADVRKKIDY SMQLNASRIK VLQAQDDIVN AMKDQAAKDL
101: LNVSRDEYAY KQLLKDLIVQ CLLRLKEPSV LLRCREEDLG LVEAVLDDAK EEYAGKAKVH APEVAVDTKI FLPPPPKSND PHGLHCSGGV VLASRDGKIV
201: CENTLDARLD VAFRMKLPVI RKSLFGQVTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)