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AT4G11010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Predictors External Curations
AdaBoost: plastidBaCelLo: plastidChloroP: plastid
EpiLoc: mitochondrioniPSORT: mitochondrionMitoPred: mitochondrion
Mitoprot 2: mitochondrionMultiLoc: mitochondrionPCLR: plastid
Plant-mPloc: cytosolPlant-mPloc: mitochondrionPlant-mPloc: nucleus
Plant-mPloc: plastidPredotar: plastidPredSL: mitochondrion
PProwler: mitochondrionSLPFA: plastidSLP-Local: mitochondrion
SubLoc: nucleusTargetP: plastidWoLF PSORT: mitochondrion
YLoc: mitochondrion
 AmiGO : mitochondrion 11718729
AmiGO : mitochondrion 11743114
AmiGO : mitochondrion 12492832
AmiGO : mitochondrion 14671022
AmiGO : mitochondrion 16618929
AmiGO : plastid 16618929
SwissProt : plastid 16381842
SwissProt : mitochondrion 16381842
TAIR : mitochondrion 18385124
TAIR : plastid 16618929
TAIR : mitochondrion 11718729
TAIR : mitochondrion 11743114
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30875866 (2019): plasma membrane
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24727099 (2014): mitochondrion
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23444301 (2013): mitochondrion
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:18385124 (2008): mitochondrion
  • PMID:16618929 (2006): unclear
  • PMID:14671022 (2004): mitochondrion
  • PMID:12492832 (2002): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleoside diphosphate kinase 3
Curator
Summary (TAIR10)		 nucleoside diphosphate kinase 3 (ndpk3), located to the inter-membrane space in mitochondria
Computational
Description (TAIR10)		 nucleoside diphosphate kinase 3 (NDPK3); FUNCTIONS IN: nucleoside diphosphate kinase activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, mitochondrial inner membrane, plastid; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: Nucleoside diphosphate kinase family protein (TAIR:AT4G23900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G11010-MONOMERBioGrid:12001EC:2.7.4.6eggNOG:COG0105
eggNOG:KOG0888EMBL:AF044265EMBL:AF080118EMBL:AL049525
EMBL:AL161518EMBL:AY035184EMBL:AY062964EMBL:CP002687
EnsemblPlants:AT4G11010EnsemblPlants:AT4G11010.1entrez:826702GeneID:826702
Genevisible:O49203GO:GO:0004550GO:GO:0005524GO:GO:0005739
GO:GO:0005743GO:GO:0005758GO:GO:0006163GO:GO:0006183
GO:GO:0006220GO:GO:0006228GO:GO:0006241GO:GO:0006979
GO:GO:0008270GO:GO:0009142GO:GO:0009536GO:GO:0009543
GO:GO:0050897Gramene:AT4G11010.1gramene_pathway:2.7.4.6gramene_pathway:DENOVOPURINE3-PWY
gramene_pathway:PWY-5687gramene_pathway:PWY0-166HAMAP:MF_00451hmmpanther:PTHR11349
hmmpanther:PTHR11349:SF53HOGENOM:HOG000224564InParanoid:O49203InterPro:IPR001564
InterPro:IPR023005KEGG:00230+2.7.4.6KEGG:00240+2.7.4.6KEGG:ath:AT4G11010
KO:K00940OMA:WFKPQELPaxDb:O49203Pfam:O49203
Pfam:PF00334PhylomeDB:O49203PIR:T01877PRIDE:O49203
PRINTS:PR01243PRO:PR:O49203PROSITE:PS00469ProteinModelPortal:O49203
Proteomes:UP000006548Reactome:R-ATH-499943RefSeq:NP_192839.1scanprosite:PS00469
SMART:SM00562SMR:O49203STRING:3702.AT4G11010.1SUPFAM:SSF54919
TAIR:AT4G11010tair10-symbols:NDPK3UniGene:At.47514UniProt:O49203
Coordinates (TAIR10) chr4:-:6732780..6734298
Molecular Weight (calculated) 25735.80 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.13
Length 238 amino acids
Sequence (TAIR10)
(BLAST) 		001: MSSQICRSAS KAAKSLLSSA KNARFFSEGR AIGAAAAVSA SGKIPLYASN FARSSGSGVA SKSWITGLLA LPAAAYMIQD QEVLAAEMER TFIAIKPDGV
101: QRGLISEIIS RFERKGFKLV GIKVIVPSKD FAQKHYHDLK ERPFFNGLCD FLSSGPVIAM VWEGDGVIRY GRKLIGATDP QKSEPGTIRG DLAVTVGRNI
201: IHGSDGPETA KDEISLWFKP QELVSYTSNS EKWLYGDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)