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AT4G10940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.985
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: stem, embryo, flower, seed; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/U-box protein (TAIR:AT3G05670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:CP002687EnsemblPlants:AT4G10940EnsemblPlants:AT4G10940.1entrez:826693Gene3D:3.30.40.10GeneID:826693GO:GO:0008270
Gramene:AT4G10940.1InParanoid:F4JN66InterPro:IPR001841InterPro:IPR001965InterPro:IPR011011InterPro:IPR013083InterPro:IPR017907
InterPro:IPR019787KEGG:ath:AT4G10940OMA:DEDCCIEPaxDb:F4JN66Pfam:PF00628Pfam:PF13639Pfscan:PS50089
PROSITE:PS00518PROSITE:PS50089ProteinModelPortal:F4JN66Proteomes:UP000006548RefSeq:NP_567371.1scanprosite:PS00518SMART:SM00184
SMART:SM00249SMR:F4JN66SUPFAM:SSF57850SUPFAM:SSF57903TAIR:AT4G10940UniGene:At.54267UniProt:F4JN66
Coordinates (TAIR10) chr4:-:6708982..6710923
Molecular Weight (calculated) 21720.00 Da
IEP (calculated) 3.57
GRAVY (calculated) -0.14
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MELDFDASNL VEDEAVEVEH NGMTEIEGER CGICMDIIID RGVLDCCQHW FCFECIDNWS TIMNLCPLCQ REFQLITCVP VFDSGESSKV DEDLVSGDED
101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPSKDTLY QF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)