suba logo
AT4G10470.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33050.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JHK0eggNOG:ENOG411189SEMBL:AF428453EMBL:BT015866EMBL:CP002687EnsemblPlants:AT4G10470EnsemblPlants:AT4G10470.1
entrez:826639GeneID:826639Gramene:AT4G10470.1hmmpanther:PTHR34361HOGENOM:HOG000064573IntAct:Q944H1KEGG:ath:AT4G10470
PhylomeDB:Q944H1Proteomes:UP000006548RefSeq:NP_567357.1STRING:3702.AT4G10470.1TAIR:AT4G10470UniGene:At.3023UniGene:At.48841
UniProt:Q944H1
Coordinates (TAIR10) chr4:+:6476109..6477509
Molecular Weight (calculated) 43114.20 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.60
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQCDRSSLS PFPISSSSLS SSFVASESDP EDSLWSDFTF DFSFLTSEDH KISPNDDNDA TTVPKGKELN PLAPQFLPFN AKKNLNKNGR EIEVNSSNQN
101: TRIGVLIHDA DESLGLVSQD SVSNTMSMLD ISNEFQKSKK LDPLAPVFVP ACAKLSEKHG AADHMLTMET NVGSTSGVSS SDSMLLNTFK VVGTHSLVVD
201: RSLRNRYSNT RLDRSSNKSH GRKKLNPLAP RFSLADHKQN VYGCEVNQAA NDFGDRHGCS TSSPSQKVDV KKLLTTIHGL SELLTHVHSS ETSDLPNEQY
301: LDLINCTVQN LNSYINNRVQ EHSGDYASAV HSSCDLYSLP NMRKVIRNHH QTEEQINPEV CFYKSLWLKA KAERSLMEHE TFLSKARS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)