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AT4G10450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L6 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L6 family; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33140.1); Has 2629 Blast hits to 2626 proteins in 920 species: Archae - 312; Bacteria - 1081; Metazoa - 421; Fungi - 181; Plants - 347; Viruses - 0; Other Eukaryotes - 287 (source: NCBI BLink).
Protein Annotations
BioGrid:11936eggNOG:COG0097eggNOG:KOG3255EMBL:AL049524EMBL:AL161517EMBL:AY065259EMBL:AY086090
EMBL:AY117346EMBL:CP002687EnsemblPlants:AT4G10450EnsemblPlants:AT4G10450.1entrez:826637Gene3D:3.90.930.12GeneID:826637
Genevisible:Q9SZX9GO:GO:0003735GO:GO:0006412GO:GO:0019843GO:GO:0022625GO:GO:0022626Gramene:AT4G10450.1
hmmpanther:PTHR11655hmmpanther:PTHR11655:SF18HOGENOM:HOG000039905InParanoid:Q9SZX9IntAct:Q9SZX9InterPro:IPR000702InterPro:IPR002359
InterPro:IPR020040KEGG:ath:AT4G10450KO:K02940OMA:RLWYPDIPANTHER:PTHR11655PaxDb:Q9SZX9Pfam:PF00347
Pfam:Q9SZX9PhylomeDB:Q9SZX9PIR:T04180PIRSF:PIRSF002162PRIDE:Q9SZX9PRO:PR:Q9SZX9PROSITE:PS00700
ProteinModelPortal:Q9SZX9Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_192783.1scanprosite:PS00700SMR:Q9SZX9STRING:3702.AT4G10450.1SUPFAM:SSF56053TAIR:AT4G10450
UniGene:At.24000UniProt:Q9SZX9
Coordinates (TAIR10) chr4:-:6463201..6464458
Molecular Weight (calculated) 21974.90 Da
IEP (calculated) 10.17
GRAVY (calculated) -0.29
Length 194 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTILSSETM DIPDGVAIKV NAKVIEVEGP RGKLTRDFKH LNLDFQLIKD QVTGKRQLKI DSWFGSRKTS ASIRTALSHV DNLIAGVTQG FLYRMRFVYA
101: HFPINASIDG NNKSIEIRNF LGEKKVRKVE MLDGVKIVRS EKVKDEIILE GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKGKI AVEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)