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AT4G10250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Columbia endomembrane-localized small heat shock protein
Computational
Description (TAIR10)
ATHSP22.0; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to heat; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G07400.1); Has 7552 Blast hits to 7552 proteins in 1747 species: Archae - 200; Bacteria - 4479; Metazoa - 74; Fungi - 263; Plants - 1560; Viruses - 4; Other Eukaryotes - 972 (source: NCBI BLink).
Protein Annotations
BioGrid:11915eggNOG:COG0071eggNOG:KOG0710EMBL:AF096373
EMBL:AK227769EMBL:AL049488EMBL:AL161516EMBL:BT004802
EMBL:CP002687EMBL:U11501EnsemblPlants:AT4G10250EnsemblPlants:AT4G10250.1
entrez:826616Gene3D:2.60.40.790GeneID:826616Genevisible:Q38806
GO:GO:0005783GO:GO:0009408Gramene:AT4G10250.1hmmpanther:PTHR11527
hmmpanther:PTHR11527:SF135HOGENOM:HOG000251751InParanoid:Q38806InterPro:IPR002068
InterPro:IPR008978InterPro:IPR031107KEGG:ath:AT4G10250KO:K13993
OMA:KGDQWHRPANTHER:PTHR11527PaxDb:Q38806Pfam:PF00011
Pfam:Q38806Pfscan:PS01031PhylomeDB:Q38806PIR:S71188
PRIDE:Q38806PRO:PR:Q38806PROSITE:PS01031ProteinModelPortal:Q38806
Proteomes:UP000006548RefSeq:NP_192763.1SMR:Q38806STRING:3702.AT4G10250.1
SUPFAM:SSF49764TAIR:AT4G10250tair10-symbols:ATHSP22.0UniGene:At.246
UniProt:Q38806
Coordinates (TAIR10) chr4:+:6370537..6371124
Molecular Weight (calculated) 21998.40 Da
IEP (calculated) 5.47
GRAVY (calculated) -0.47
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKHLLSIFF IGALLLGNIK TSEGSLSSAL ETTPGSLLSD LWLDRFPDPF KILERIPLGL ERDTSVALSP ARVDWKETAE GHEIMLDIPG LKKDEVKIEV
101: EENGVLRVSG ERKREEEKKG DQWHRVERSY GKFWRQFKLP DNVDMESVKA KLENGVLTIN LTKLSPEKVK GPRVVNIAAE EDQTAKISSS ESKEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)