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AT4G10220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.545
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of Unknown Function (DUF239)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G10210.1); Has 656 Blast hits to 621 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 8; Plants - 635; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002687EnsemblPlants:AT4G10220EnsemblPlants:AT4G10220.1entrez:826613
GeneID:826613Gramene:AT4G10220.1hmmpanther:PTHR31589hmmpanther:PTHR31589:SF2
InParanoid:F4JLL4InterPro:IPR004314InterPro:IPR025521KEGG:ath:AT4G10220
OMA:MILACYIPaxDb:F4JLL4Pfam:PF03080Pfam:PF14365
Pfscan:PS51257PRIDE:F4JLL4Proteomes:UP000006548RefSeq:NP_192760.2
TAIR:AT4G10220TMHMM:TMhelixUniGene:At.54253UniProt:F4JLL4
Coordinates (TAIR10) chr4:+:6362189..6365079
Molecular Weight (calculated) 45168.10 Da
IEP (calculated) 9.16
GRAVY (calculated) -0.45
Length 400 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMKLGCALP MTCMILACYI ICGSLLMSHC HGVIKEAKTL KSNEDLEIEH KLKLINKPAF KIVKTINGER YGCVDFYKQP GLDHSSMKNH TFHHKMRMSY
101: SEGSKMKRKT HRNTTFGHFW ENGVGCPIGT VPIPRVTKDA LLRMKSFDSD NSNPQSSWSK TYKPASSIDD HHFAVVRTTK GTRSYNGASM NINTFTPSVG
201: PMQFSASRMH FQIGNEFIQV GWIVHPQLYH DFNSRIFVFT KSGGNACYNL FCPDGSGMIL VRQDLTPGLL AEQKSIDFAI MKDKINGNWW LLMGTSWEEV
301: GFWPSSRFKE SSGTMVEWGG EVYSPSPPNP PMGNSHYPKG SPKVDSYVRL ITTVDENYNT DKTVKNTERY SDSCYKVRDA TETFWSHVGH LIIYGGPGCK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)