AT4G10200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TTF-type zinc finger protein with HAT dimerisation domain | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TTF-type zinc finger protein with HAT dimerisation domain; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein / transposase-related (TAIR:AT2G16040.1); Has 986 Blast hits to 895 proteins in 48 species: Archae - 0; Bacteria - 2; Metazoa - 584; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:6353172..6355591 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84882.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.48 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||
| Length | 733 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKSLADSML RYVKRSTPLK PNENPTSVEN DKAEEICEDT DVNMNTIPEC VYSGEKDELL EITDPANWKN IDRELRDFLV EKGPMKRVHE KYAFPKTAGI 101: RRHFSHRYYK REMKNGDKQD RNWLLYSKVS DKVYCFCCKL FGRDQDAMQL SSTGFNDWRN IRIRLSQHET SHRHIVCMSK WMELELRLRK HLTIDKCLQK 201: DINIEKNHWR EVLLRIFSLV KNLAKQNLAF RGENEKIGQK NNGNFRVLLN RSATLIQSYE SISDELKKVQ LMIIKKIQEA KYFSVILDCT PDKSHKEQMS 301: LIIRCVDVSM ASTQVSEFFL TFVEVSDKSG EGLFELLCDT LVALNLNIND VRGQGYDNGC NMKGKHKGVQ KKLLDINSRA FYTPCGCHSL NLPSHLKKRL 401: NSLESFSGFT ACFHHLQQGL KIRDALDYLA ENCDDPKARS DADCLATSET HRIGGFEFLF GMVIWYNLLF TMNTVSKALQ SENIDIELAL VQLKGLVSYL 501: QNYRETGFQE AKAEATLIAE SMDIEPKFPV KRKRIIKRKR HFDEEMENDV ETELLSEEEN FKVRFEQFEE YGRIFRFLFD LRKLKSASDD GLKAACINLE 601: TSLKHGDSSD VDGNHLFLEL KVLKELLPTE ITKAIEVLNF LKKFEGCYPN TWIAFRVMLT VPVSVASAER SFSKLKLIKS YSRSTMSEER LNALAILSIE 701: RDLVGELDYI SLMNDFAAKT ARRSIFEIRD DDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)