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AT4G10180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : light-mediated development protein 1 / deetiolated1 (DET1)
Curator
Summary (TAIR10)
Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.
Computational
Description (TAIR10)
DE-ETIOLATED 1 (DET1); FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, negative regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: De-etiolated protein 1, Det1 (InterPro:IPR019138), Six-hairpin glycosidase-like (InterPro:IPR008928); Has 248 Blast hits to 240 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
BioGrid:11908eggNOG:ENOG410XSK5eggNOG:KOG2558EMBL:AF096373
EMBL:AL049487EMBL:AL161516EMBL:BT015348EMBL:BT020454
EMBL:CP002687EMBL:L33695EnsemblPlants:AT4G10180EnsemblPlants:AT4G10180.1
entrez:826609GeneID:826609Genevisible:P48732GO:GO:0003824
GO:GO:0005634GO:GO:0006281GO:GO:0009585Gramene:AT4G10180.1
hmmpanther:PTHR13374HOGENOM:HOG000007709InParanoid:P48732IntAct:P48732
InterPro:IPR008928InterPro:IPR019138iPTMnet:P48732KEGG:ath:AT4G10180
KO:K10571OMA:KFKIQAGPaxDb:P48732Pfam:P48732
Pfam:PF09737PhylomeDB:P48732PIR:A54841PRIDE:P48732
PRO:PR:P48732Proteomes:UP000006548RefSeq:NP_192756.2STRING:3702.AT4G10180.1
SUPFAM:SSF48208TAIR:AT4G10180tair10-symbols:ATDET1tair10-symbols:DET1
tair10-symbols:FUS2UniGene:At.33647UniProt:P48732
Coordinates (TAIR10) chr4:+:6346543..6349146
Molecular Weight (calculated) 62494.90 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.34
Length 543 amino acids
Sequence (TAIR10)
(BLAST)
001: MFTSGNVTAR VFERQIRTPP PGASVNRARH FYENLVPSYT LYDVESPDHC FRKFTEDGLF LISFSRNHQE LIVYRPSWLT YSTTDDSTTT LPPLPRRASK
101: FDSFFTQLYS VNLASSNELI CKDFFLYHQT RRFGLFATST AQIHDSSSPS NDAVPGVPSI DKITFVLLRL DDGVVLDERV FLHDFVNLAH NMGVFLYDDL
201: LAILSLRYQR IHLLQIRDSG HLVDARAIGY FCREDDELFL NSSSQAMMSQ DKSKQQSLSG SKEDDTGENG LRHSLSQPSG SNSFLSGVKQ RLLSFIFREI
301: WNEESDNVMR VQSLKKKFYF HFQDYVDLII WKVQFLDRQH LLIKFGSVDG GVTRSADHHP AFFAVYNMET TDIVAFYQNS AEDLYQLFEQ FSDHFTVSSS
401: TPFMNFVTSH SNNVYALEQL KYTKNKSNSF SQFVKKMLLS LPFSCQSQSP SPYFDQSLFR FDEKLISAAD RHRQSSDNPI KFISRRQPQT LKFKIKPGPE
501: CGTADGRSKK ICSFLFHPHL PLAISIQQTL FMPPSVVNIH FRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)