AT4G10000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Thioredoxin family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Thioredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione S-transferase, N-terminal (InterPro:IPR004045); BEST Arabidopsis thaliana protein match is: Thioredoxin family protein (TAIR:AT5G03880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:6260707..6263053 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37058.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.94 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||
| Length | 333 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSISVVDSSL CHPTASFPSS MVHSNRFSKR ISGNGNWVRE RRRLYVKSSN SEGKKEEAAQ KSSSNNTSSF LSFLCPLLKV FSGGDPSQQR NHALEVATSS 101: LASVARLPWG SRVSTGSIDN QDVSSNPPLR LQLFEFEACP FCRRVREAMT ELDLSVEVYP CPKGSIRHRE LVRRSGGKEM FPFLVDPNTE TLMYESGDIV 201: KYLFKQYGNG RGPSTGLLES TLFTGWMPTL LRAGRGMSLW DKASTDLPPK MLELFSYENN PYSRLVREAL CELELPYVLH NIGEGSTRMK SLLNASGSNK 301: VPFLVDPNTG VQLGDYEKIL AYLFKTYSSA AFA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)