suba logo
AT4G10000.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione S-transferase, N-terminal (InterPro:IPR004045); BEST Arabidopsis thaliana protein match is: Thioredoxin family protein (TAIR:AT5G03880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHR8eggNOG:ENOG410ZNRHEMBL:CP002687EnsemblPlants:AT4G10000EnsemblPlants:AT4G10000.1EnsemblPlants:AT4G10000.2entrez:826591
Gene3D:3.40.30.10GeneID:826591GO:GO:0009055GO:GO:0009507GO:GO:0015035GO:GO:0045454Gramene:AT4G10000.1
Gramene:AT4G10000.2hmmpanther:PTHR11260hmmpanther:PTHR11260:SF136InterPro:IPR002109InterPro:IPR004045InterPro:IPR012336KEGG:ath:AT4G10000
KO:K03354OMA:WMPTILRPfam:PF13417Pfscan:PS50404Pfscan:PS51354PROSITE:PS50404PROSITE:PS51354
Proteomes:UP000006548RefSeq:NP_567349.1RefSeq:NP_849353.1SMR:F4JKW0STRING:3702.AT4G10000.1SUPFAM:SSF52833TAIR:AT4G10000
UniGene:At.33658UniProt:F4JKW0
Coordinates (TAIR10) chr4:-:6260707..6263053
Molecular Weight (calculated) 37058.10 Da
IEP (calculated) 8.94
GRAVY (calculated) -0.35
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MSISVVDSSL CHPTASFPSS MVHSNRFSKR ISGNGNWVRE RRRLYVKSSN SEGKKEEAAQ KSSSNNTSSF LSFLCPLLKV FSGGDPSQQR NHALEVATSS
101: LASVARLPWG SRVSTGSIDN QDVSSNPPLR LQLFEFEACP FCRRVREAMT ELDLSVEVYP CPKGSIRHRE LVRRSGGKEM FPFLVDPNTE TLMYESGDIV
201: KYLFKQYGNG RGPSTGLLES TLFTGWMPTL LRAGRGMSLW DKASTDLPPK MLELFSYENN PYSRLVREAL CELELPYVLH NIGEGSTRMK SLLNASGSNK
301: VPFLVDPNTG VQLGDYEKIL AYLFKTYSSA AFA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)