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AT4G09990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF579)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G33800.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
EC:2.1.1.112eggNOG:ENOG410IFG2eggNOG:ENOG410YHE6EMBL:AL049481EMBL:AL161516EMBL:BT030090EMBL:CP002687
EMBL:JX914595EnsemblPlants:AT4G09990EnsemblPlants:AT4G09990.1entrez:826590GeneID:826590Genevisible:Q9T0F7GO:GO:0000139
GO:GO:0005794GO:GO:0016021GO:GO:0030775GO:GO:0045491GO:GO:0045492Gramene:AT4G09990.1hmmpanther:PTHR31444
hmmpanther:PTHR31444:SF2HOGENOM:HOG000238795InParanoid:Q9T0F7InterPro:IPR006514InterPro:IPR021148KEGG:ath:AT4G09990KO:K18801
OMA:RTEDCKAPaxDb:Q9T0F7Pfam:PF04669Pfam:Q9T0F7PhylomeDB:Q9T0F7PIR:T04003PRIDE:Q9T0F7
PRO:PR:Q9T0F7ProteinModelPortal:Q9T0F7Proteomes:UP000006548RefSeq:NP_192737.1STRING:3702.AT4G09990.1TAIR:AT4G09990TIGRfam:TIGR01627
TIGRFAMs:TIGR01627TMHMM:TMhelixUniGene:At.33659UniProt:Q9T0F7
Coordinates (TAIR10) chr4:-:6259110..6260064
Molecular Weight (calculated) 32839.00 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.34
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: MRNKSQSFIS SKLIFICCSI LVLFILFLKR ASFSSNSTAT IRDEYHQKSK CPSTPQQCTK LPTSLSDALV HYVTSEITPQ QTFDEVSVSK RVLDKKSPCN
101: FLVFGLGHDS LMWASLNHGG RTLFLEEDEA WIETVTKKFP NLESYHVVYD TKVKDSNKLM ELKRTEDCKA VSDPRDSKCA LSLKGFPADV YETQWDVIMV
201: DAPTGYHDEA PGRMSAIYTA GLLARNRYDG GETDVFVHDI NRPVEDEFSV AFLCGGYMKE QQGRLRHFNI PSHRASFGTP FCPADISRRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)