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AT4G09830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Uncharacterised conserved protein UCP009193
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised conserved protein UCP009193; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP009193 (InterPro:IPR016549); BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein UCP009193 (TAIR:AT5G64780.1); Has 86 Blast hits to 86 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWMDeggNOG:ENOG4111Z29EMBL:AL049482EMBL:AL161516EMBL:AY074338EMBL:AY091370EMBL:CP002687
EnsemblPlants:AT4G09830EnsemblPlants:AT4G09830.1entrez:826572GeneID:826572Gramene:AT4G09830.1hmmpanther:PTHR33675hmmpanther:PTHR33675:SF1
IntAct:Q9SZ98InterPro:IPR016549KEGG:ath:AT4G09830OMA:REKLYQWPhylomeDB:Q9SZ98PIR:T04031PIRSF:PIRSF009193
Proteomes:UP000006548RefSeq:NP_192721.1STRING:3702.AT4G09830.1TAIR:AT4G09830UniGene:At.46849UniGene:At.71070UniProt:Q9SZ98
Coordinates (TAIR10) chr4:+:6188866..6190591
Molecular Weight (calculated) 21072.60 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.73
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)