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AT4G09820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.
Computational
Description (TAIR10)
TRANSPARENT TESTA 8 (TT8); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: trichome differentiation, regulation of flavonoid biosynthetic process, regulation of proanthocyanidin biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, micropylar endosperm; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 2828 Blast hits to 2555 proteins in 185 species: Archae - 0; Bacteria - 2; Metazoa - 59; Fungi - 73; Plants - 2682; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
BioGrid:11870eggNOG:ENOG410IMK5eggNOG:ENOG4111SJNEMBL:AJ277509EMBL:AL049482EMBL:AL161516EMBL:CP002687
EMBL:DQ446813EMBL:DQ653187EnsemblPlants:AT4G09820EnsemblPlants:AT4G09820.1entrez:826571Gene3D:4.10.280.10GeneID:826571
Genevisible:Q9FT81GO:GO:0000976GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009813GO:GO:0009962
GO:GO:0010026GO:GO:0010214GO:GO:0048316GO:GO:2000029Gramene:AT4G09820.1hmmpanther:PTHR11514hmmpanther:PTHR11514:SF28
HOGENOM:HOG000237985InParanoid:Q9FT81IntAct:Q9FT81InterPro:IPR011598InterPro:IPR025610KEGG:ath:AT4G09820ncoils:Coil
OMA:LEMRCEYPaxDb:Q9FT81Pfam:PF00010Pfam:PF14215Pfam:Q9FT81Pfscan:PS50888PhylomeDB:Q9FT81
PRIDE:Q9FT81PRO:PR:Q9FT81PROSITE:PS50888ProteinModelPortal:Q9FT81Proteomes:UP000006548RefSeq:NP_192720.2SMART:SM00353
SMR:Q9FT81STRING:3702.AT4G09820.1SUPFAM:SSF47459TAIR:AT4G09820tair10-symbols:BHLH42tair10-symbols:TT8UniGene:At.10175
UniProt:Q9FT81
Coordinates (TAIR10) chr4:+:6182067..6186261
Molecular Weight (calculated) 59201.10 Da
IEP (calculated) 5.68
GRAVY (calculated) -0.54
Length 518 amino acids
Sequence (TAIR10)
(BLAST)
001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)