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AT4G09760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
encodes a choline synthase whose gene expression is induced by high salt and mannitol.
Computational
Description (TAIR10)
Protein kinase superfamily protein; CONTAINS InterPro DOMAIN/s: Choline/ethanolamine kinase (InterPro:IPR002573), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: choline kinase 1 (TAIR:AT1G71697.1); Has 1546 Blast hits to 1491 proteins in 370 species: Archae - 0; Bacteria - 353; Metazoa - 436; Fungi - 251; Plants - 163; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G09760-MONOMERBioCyc:ARA:GQT-1965-MONOMERDNASU:826564EC:2.7.1.32eggNOG:COG0510eggNOG:KOG2686EMBL:AL049482
EMBL:AL161515EMBL:AY085061EMBL:AY088512EMBL:CP002687EnsemblPlants:AT4G09760EnsemblPlants:AT4G09760.1EnsemblPlants:AT4G09760.2
entrez:826564ExpressionAtlas:Q9SZ92GeneID:826564Genevisible:Q9SZ92GO:GO:0004103GO:GO:0005524gramene_pathway:2.7.1.32
gramene_pathway:PWY3O-450hmmpanther:PTHR22603hmmpanther:PTHR22603:SF39HOGENOM:HOG000041274InParanoid:Q9SZ92InterPro:IPR011009KEGG:ath:AT4G09760
KO:K14156ncoils:CoilOMA:ERRRFICPaxDb:Q9SZ92Pfam:PF01633Pfam:Q9SZ92PhylomeDB:Q9SZ92
PIR:T04023PRIDE:Q9SZ92PRO:PR:Q9SZ92ProteinModelPortal:Q9SZ92Proteomes:UP000006548Reactome:R-ATH-1483191Reactome:R-ATH-1483213
RefSeq:NP_192714.1RefSeq:NP_849350.1SMR:Q9SZ92STRING:3702.AT4G09760.1SUPFAM:SSF56112TAIR:AT4G09760UniGene:At.27989
UniGene:At.33676UniPathway:UPA00753UniProt:Q9SZ92
Coordinates (TAIR10) chr4:-:6148955..6151150
Molecular Weight (calculated) 40352.70 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.41
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVGIFGLIP SSSPDELRKI LQALSTKWGD VVEDFESLEV KPMKGAMTNE VFMVSWPRKE TNLRCRKLLV RVYGEGVELF FNRDDEIRTF EYVARHGHGP
101: TLLGRFAGGR VEEFIHARTL SATDLRDPNI SALVASKLRR FHSIHIPGDR IMLIWDRMRT WVGQAKNLCS NEHSTEFGLD DIEDEINLLE QEVNNEQEIG
201: FCHNDLQYGN IMIDEETNAI TIIDYEYASY NPIAYDIANH FCEMAADYHS NTPHILDYTL YPGEEERRRF ICNYLTSSGE EAREEDIEQL LDDIEKYTLA
301: SHLFWGLWGI ISGYVNKIEF DYIEYSRQRF KQYWLRKPKL LSFFPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)