suba logo
AT4G09730.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:20423899 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RH39
Curator
Summary (TAIR10)
Encodes RH39, a DEAD-box protein involved in the introduction of the hidden break into the 23S rRNA in the chloroplasts. Recombinant RH39 binds to the 23S rRNA in a segment adjacent to the stem-loop creating the hidden break target loop in a sequence-dependent manner. Has ATP-hydrolyzing activity at a Kcat of 5.3 /min in the presence of rRNA sequence. Mutants have drastically reduced level of level of ribulose 1,5-bisphosphate carboxylase/oxygenase.
Computational
Description (TAIR10)
RH39 (RH39); FUNCTIONS IN: LSU rRNA binding, ATPase activity, ATP-dependent helicase activity; INVOLVED IN: chloroplast ribulose bisphosphate carboxylase complex biogenesis, chloroplast rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G06980.1); Has 40425 Blast hits to 39698 proteins in 3032 species: Archae - 675; Bacteria - 19989; Metazoa - 5933; Fungi - 4498; Plants - 2407; Viruses - 9; Other Eukaryotes - 6914 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1594-MONOMEREC:3.6.4.13eggNOG:COG0513eggNOG:KOG0331EMBL:AK175347EMBL:AK175353EMBL:AK175435
EMBL:AK175766EMBL:AK221801EMBL:AL049482EMBL:AL161515EMBL:BT010574EMBL:CP002687EnsemblPlants:AT4G09730
EnsemblPlants:AT4G09730.1entrez:826559Gene3D:3.40.50.300GeneID:826559Genevisible:Q56X76GO:GO:0004004GO:GO:0005524
GO:GO:0009507GO:GO:0010501GO:GO:0016887GO:GO:0070180GO:GO:0080158GO:GO:1901259Gramene:AT4G09730.1
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF247HOGENOM:HOG000264923InParanoid:Q56X76InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001
InterPro:IPR014014InterPro:IPR027417iPTMnet:Q56X76KEGG:ath:AT4G09730OMA:VYRVAKSPaxDb:Q56X76Pfam:PF00270
Pfam:PF00271Pfam:Q56X76Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q56X76PIR:T04020
PRIDE:Q56X76PRO:PR:Q56X76PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q56X76Proteomes:UP000006548
RefSeq:NP_849348.1SMART:SM00487SMART:SM00490SMR:Q56X76STRING:3702.AT4G09730.1SUPFAM:SSF52540TAIR:AT4G09730
tair10-symbols:RH39UniGene:At.43433UniProt:Q56X76
Coordinates (TAIR10) chr4:+:6136333..6139510
Molecular Weight (calculated) 68927.90 Da
IEP (calculated) 10.59
GRAVY (calculated) -0.52
Length 621 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGASRTILS LSLSSSLFTF SKIPHVFPFL RLHKPRFHHA FRPLYSAAAT TSSPTTETNV TDPDQLKHTI LLERLRLRHL KESAKPPQQR PSSVVGVEEE
101: SSIRKKSKKL VENFQELGLS EEVMGALQEL NIEVPTEIQC IGIPAVMERK SVVLGSHTGS GKTLAYLLPI VQLMREDEAN LGKKTKPRRP RTVVLCPTRE
201: LSEQVYRVAK SISHHARFRS ILVSGGSRIR PQEDSLNNAI DMVVGTPGRI LQHIEEGNMV YGDIAYLVLD EADTMFDRGF GPEIRKFLAP LNQRALKTND
301: QGFQTVLVTA TMTMAVQKLV DEEFQGIEHL RTSTLHKKIA NARHDFIKLS GGEDKLEALL QVLEPSLAKG SKVMVFCNTL NSSRAVDHYL SENQISTVNY
401: HGEVPAEQRV ENLKKFKDEE GDCPTLVCTD LAARGLDLDV DHVVMFDFPK NSIDYLHRTG RTARMGAKGK VTSLVSRKDQ MLAARIEEAM RNNESLESLT
501: TDNVRRDAAR THITQEKGRS VKQIREVSKQ RNSRDKPSSS SPPARSTGGK TPVRKSSSSS FSKPRKASSP PEKSSKPKRK ILKTVGSRSI AARGKTGSDR
601: RPGKKLSVVG FRGKSSSARA S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)