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AT4G09610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GAST1 protein homolog 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GAST1 protein homolog 2 (GASA2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: GAST1 protein homolog 3 (TAIR:AT4G09600.1); Has 469 Blast hits to 469 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 469; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3Q8eggNOG:ENOG410YT52EMBL:AL161515EMBL:AL161831EMBL:CP002687EMBL:U11765EnsemblPlants:AT4G09610
EnsemblPlants:AT4G09610.1entrez:826546GeneID:826546Genevisible:P46688GO:GO:0005576GO:GO:0009740Gramene:AT4G09610.1
hmmpanther:PTHR23201hmmpanther:PTHR23201:SF7HOGENOM:HOG000240234InParanoid:P46688InterPro:IPR003854KEGG:ath:AT4G09610OMA:SGRCKGR
PaxDb:P46688Pfam:P46688Pfam:PF02704PhylomeDB:P46688PIR:S60230PRIDE:P46688PRO:PR:P46688
ProteinModelPortal:P46688Proteomes:UP000006548RefSeq:NP_192699.1STRING:3702.AT4G09610.1TAIR:AT4G09610tair10-symbols:GASA2UniGene:At.4230
UniProt:P46688
Coordinates (TAIR10) chr4:-:6074927..6075573
Molecular Weight (calculated) 10532.00 Da
IEP (calculated) 8.62
GRAVY (calculated) 0.17
Length 99 amino acids
Sequence (TAIR10)
(BLAST)
1: MAVFRSTLVL LLIIVCLTTY ELHVHAADGA KVGEGVVKID CGGRCKDRCS KSSRTKLCLR ACNSCCSRCN CVPPGTSGNT HLCPCYASIT THGGRLKCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)