suba logo
AT4G09490.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.979
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: Beta-galactosidase related protein (TAIR:AT2G06845.1); Has 198 Blast hits to 198 proteins in 14 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:AL161515EMBL:CP002687EnsemblPlants:AT4G09490EnsemblPlants:AT4G09490.1entrez:826533
Gene3D:3.30.420.10GeneID:826533GO:GO:0003676GO:GO:0004523GO:GO:0016740Gramene:AT4G09490.1hmmpanther:PTHR33033
InterPro:IPR002156InterPro:IPR012337KEGG:ath:AT4G09490OMA:SETSCVEPfam:PF13456Pfscan:PS50879PhylomeDB:Q9M0P4
PIR:G85096PROSITE:PS50879Proteomes:UP000006548RefSeq:NP_192687.1STRING:3702.AT4G09490.1SUPFAM:SSF53098TAIR:AT4G09490
UniGene:At.33691UniProt:Q9M0P4
Coordinates (TAIR10) chr4:-:6015583..6016575
Molecular Weight (calculated) 18873.90 Da
IEP (calculated) 6.52
GRAVY (calculated) 0.37
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MLAQLITIFF IKKFFKCLLQ FNALRPDLDR VTIFTDAAWK HETKDVGFGW VIRNCPELTA LHYQSAARNV RLPLMAEAIA LFLALQYAQS IGITKLSMAS
101: DSQQLITAIT SESPSTEFYG IIFDILNLSL GFADVSFSFV PRSENRVADE LAKSSLISFS IVPGSTGLNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)