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AT4G09460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 6
Curator
Summary (TAIR10)
Encodes myb6 DNA-binding protein.
Computational
Description (TAIR10)
myb domain protein 6 (MYB6); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: high response to osmotic stress 10 (TAIR:AT1G35515.1); Has 9066 Blast hits to 8378 proteins in 471 species: Archae - 0; Bacteria - 0; Metazoa - 780; Fungi - 460; Plants - 6053; Viruses - 3; Other Eukaryotes - 1770 (source: NCBI BLink).
Protein Annotations
BioGrid:11829eggNOG:COG5147eggNOG:KOG0048EMBL:AL161515EMBL:AY086813EMBL:AY519604EMBL:BT004171
EMBL:BT005085EMBL:CP002687EMBL:U26936EMBL:Z95782EnsemblPlants:AT4G09460EnsemblPlants:AT4G09460.1entrez:826530
Gene3D:1.10.10.60GeneID:826530Genevisible:Q38851GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009739GO:GO:0009751GO:GO:0009753Gramene:AT4G09460.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF643HOGENOM:HOG000237600
InParanoid:Q38851IntAct:Q38851InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT4G09460KO:K09422
ncoils:CoilOMA:SADSKPWPaxDb:Q38851Pfam:PF00249Pfam:Q38851Pfscan:PS51294PhylomeDB:Q38851
PIR:D85096PRIDE:Q38851PRO:PR:Q38851PROSITE:PS51294ProteinModelPortal:Q38851Proteomes:UP000006548RefSeq:NP_192684.1
SMART:SM00717SMR:Q38851STRING:3702.AT4G09460.1SUPFAM:SSF46689TAIR:AT4G09460tair10-symbols:AtMYB6tair10-symbols:MYB6
UniGene:At.4218UniProt:Q38851
Coordinates (TAIR10) chr4:+:5993019..5994038
Molecular Weight (calculated) 26475.10 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.70
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT
101: DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD
201: LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)