suba logo
AT4G09150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : T-complex protein 11
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
T-complex protein 11; FUNCTIONS IN: phosphopantetheine binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: T-complex 11 (InterPro:IPR008862), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: T-complex protein 11 (TAIR:AT1G22930.1); Has 14735 Blast hits to 9884 proteins in 1062 species: Archae - 66; Bacteria - 2337; Metazoa - 6091; Fungi - 1162; Plants - 694; Viruses - 23; Other Eukaryotes - 4362 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZDEHeggNOG:KOG1981EMBL:AL161514EMBL:CP002687
EnsemblPlants:AT4G09150EnsemblPlants:AT4G09150.1entrez:826496ExpressionAtlas:Q9M0R3
GeneID:826496Gramene:AT4G09150.1hmmpanther:PTHR12832hmmpanther:PTHR12832:SF20
HOGENOM:HOG000240820InterPro:IPR006162InterPro:IPR008862ncoils:Coil
PANTHER:PTHR12832Pfam:PF05794PhylomeDB:Q9M0R3PIR:G85092
PROSITE:PS00012Proteomes:UP000006548RefSeq:NP_192654.1scanprosite:PS00012
STRING:3702.AT4G09150.2TAIR:AT4G09150UniGene:At.4207UniProt:Q9M0R3
Coordinates (TAIR10) chr4:+:5828753..5833475
Molecular Weight (calculated) 122910.00 Da
IEP (calculated) 10.20
GRAVY (calculated) -0.44
Length 1097 amino acids
Sequence (TAIR10)
(BLAST)
0001: MTEPERLGGI SLSFPVNEED TVTTTSPKTL PRRLRRRLLE PKSPVSAAEI DSKLREADLR RQQYYESLSS KARPKMRSPR SGSIEELSQR LESKLNAAEQ
0101: KRLSILEKEL ARLAKMDEAR QAAKNGLEQR VEKERDELES KVEERVLKAE KNRMLLFKAM AQRRAAKRQR AAQSLMKKAI QETRYKESVR AAIYQKRAAA
0201: ESKRMGILEA ERRRANARLT RVFGAASSVR SQKEAERRKM KDRLEERLQR AKKLKAQYMR RRRGMDSCSS SRSETMRKNQ VHLVRMLVRC WRRFAKYKKS
0301: TFVLARAYHE LGINEKSIES VPFEQFAIQM NSVSVIQTVK ALLDRLEIRL TLSKASNVEN INHLLKHIFP PVRRGKSPSP MSKGEQNSPN SKMGYQKLKK
0401: IARYPARIFL CAYMIKQHPG AIFRGRGEHE IALVESATCL IREFELLVKV ILEGPESTLP GNVSFVAQRP KKFRSQLEAF DKAWCSYLEG FVVWKINDAK
0501: LLEKDLARTQ ESELSEVSKH TSSPKIIDSG LNQKTVKASS PTNRALFSET DGARESKAPA DSHLPSSSSP SPGSSNLSPS LNSGSEAIST PNVVANSFDA
0601: ALASENEVIV NEIVHDNSSS FADSLDPNTG DTSNLQVRVK ETMEKAFWDG VMESMKQSQP DFSWVIKLMK EVRDELCEIS PKDWRQEIVQ TIDTDVLSQL
0701: LASGNVDMGY LGNILEFSLG ILLKLSAPAN EEEIRVTHHK LMTELGEIVP TDGHSNSSYA VLMVKGLRFV LQQIQILKKE ISKSRLKLLE PLLKGPAGLE
0801: YLKKSFSSRH GSPDQASSSL PLTKRWLLSV RGEAEREWKE HKDALSAVIN NHSGSSGLPS TTMRTGGNVS SVSKVNTPSS PFPGIELSEC KGETVDLLVR
0901: IGLLKMVSEI GGLTLETVPE TFQLNLSRLR DVQSQIQKIT LVSISVLILQ QTLVSENSSS IDMEAITRTC INRLYEMLDA KPDAGLSEIM ETLSELLDSN
1001: DAETKKQVIA NMLVKSLQAG DAVFTHVSQT IYLAIRAAVL AGNNTKRKQL VETMLRKIGA ASLSDKVIEV SDILVLVATV SRSVHGLWYE ELLKKPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)