AT4G09080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Outer membrane OMP85 family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Knockout mutants have abnormal etioplasts. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TOC75-IV; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 75-III (TAIR:AT3G46740.1); Has 439 Blast hits to 437 proteins in 90 species: Archae - 0; Bacteria - 160; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:5804451..5806093 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43634.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.71 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||
| Length | 396 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEAVKEAVRK IKSLVIPHAD EKDNGIVFEI KLNETDQRVE KWGLDPSLDF FEVTGNCNLG RPNSEGSNQS LMGSVTIRNI FNPKLDDLLS KIEYVRFLEA 101: VKKPRNRTFK TSFFNSRKLS PVFTGGPGYE DLVPPMFVGR DCLKATITEN LTRQRELTYG VMFEEIITRD ENRRISENGL LLSPDGGISI NGPPTTLSGT 201: GIDHIATLQA NITRDNTKLV NGAVVGEKNI FQVDQGLGIG NNFPLFNRHQ LSLTSFIQLK QVEEGSDKPQ PPVLVLHGRY GGCIGDLPSY DVFALGGPNS 301: VRGYSMGELG AAKNILELGA EIRIPVKNTH VYAFAEHGND LGSSKDVKGN PTGLYRKMGH GSSYGLGVKL GMVRAEYTVR HNRGTGALFL RFGERY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)