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AT4G08980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.989
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-BOX WITH WD-40 2
Curator
Summary (TAIR10)
Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response.
Computational
Description (TAIR10)
F-BOX WITH WD-40 2 (FBW2); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:11775eggNOG:ENOG410IT1CeggNOG:ENOG410YQ9VEMBL:AF128396EMBL:AK317222EMBL:AL161513EMBL:AY084585
EMBL:BT002431EMBL:BT008715EMBL:CP002687EnsemblPlants:AT4G08980EnsemblPlants:AT4G08980.1EnsemblPlants:AT4G08980.2EnsemblPlants:AT4G08980.3
EnsemblPlants:AT4G08980.4EnsemblPlants:AT4G08980.5entrez:826476Gene3D:3.80.10.10GeneID:826476Genevisible:Q9ZPE4GO:GO:0005634
GO:GO:0009737GO:GO:0010608GO:GO:0010629GO:GO:0016567Gramene:AT4G08980.1Gramene:AT4G08980.2Gramene:AT4G08980.3
Gramene:AT4G08980.4Gramene:AT4G08980.5hmmpanther:PTHR24006HOGENOM:HOG000239506InParanoid:Q9ZPE4IntAct:Q9ZPE4InterPro:IPR001611
InterPro:IPR001810InterPro:IPR032675iPTMnet:Q9ZPE4KEGG:ath:AT4G08980OMA:LELRFYEPaxDb:Q9ZPE4Pfam:PF12937
Pfam:PF13516Pfam:Q9ZPE4PhylomeDB:Q9ZPE4PIR:F85090PRO:PR:Q9ZPE4ProteinModelPortal:Q9ZPE4Proteomes:UP000006548
RefSeq:NP_001078359.1RefSeq:NP_001154215.1RefSeq:NP_567343.1RefSeq:NP_849346.1RefSeq:NP_974523.1SMR:Q9ZPE4STRING:3702.AT4G08980.1
SUPFAM:SSF52047TAIR:AT4G08980tair10-symbols:FBW2UniGene:At.27697UniPathway:UPA00143UniProt:Q9ZPE4
Coordinates (TAIR10) chr4:+:5758993..5760108
Molecular Weight (calculated) 36484.50 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.18
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)