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AT4G08940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin carboxyl-terminal hydrolase family protein; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G01037.1); Has 405 Blast hits to 399 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 405; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:826472eggNOG:ENOG410IVEPeggNOG:ENOG410YE1HEMBL:AK175286EMBL:BT010540EMBL:CP002687EnsemblPlants:AT4G08940
EnsemblPlants:AT4G08940.1entrez:826472GeneID:826472GO:GO:0006979GO:GO:0016787Gramene:AT4G08940.1hmmpanther:PTHR31476
hmmpanther:PTHR31476:SF14HOGENOM:HOG000243193InterPro:IPR021099KEGG:ath:AT4G08940OMA:SIHHIVEPfam:PF11955PhylomeDB:Q6NQB8
Proteomes:UP000006548RefSeq:NP_192633.2TAIR:AT4G08940UniGene:At.33721UniGene:At.66591UniProt:Q6NQB8
Coordinates (TAIR10) chr4:-:5730986..5732173
Molecular Weight (calculated) 46587.50 Da
IEP (calculated) 10.04
GRAVY (calculated) -0.55
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MAWLRFFSRT LKSLPQISSS SPNPNPNFRT SPFSTSFLIT KTPDKLKKKR KKPESARTKS IQHESTKLPH LESLVSRDAH FRFLIRSKEF ISKQPERILR
101: LDDAGKLYRE LGFPRGRKVT KFIPKHPLIF QTYRHSDGKI WLGFTEFMED LLDEEKGLME SMELDRVNCV RKLLMMTKDK RILLSKIHHT RLLFGIPEDF
201: RDRVAKYPDY FRVVTGGDGN RVLELVNWDT NLAVSELERL FMIDEDKAKR VFKFPVKHGK ELELEEKDTR KLNLLNTFPL VSPYSDGWKL DVWSLEAEKY
301: RVGIVHEFLN LTLEKRASIH HIVEFKDEFS LTRQTYQMLK KQSMSFYLAG TEMNWTVFLK DAYDENGVLV SKDPQVVFNE KLYKYADMQQ MEQVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)