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AT4G08790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein; FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrilase activity; INVOLVED IN: response to cadmium ion, nitrogen compound metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010); BEST Arabidopsis thaliana protein match is: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (TAIR:AT5G12040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G08790-MONOMERBioGrid:11748EC:3.5.-.-eggNOG:COG0388eggNOG:KOG0807EMBL:AF372904EMBL:AL161512
EMBL:AL161813EMBL:AY133544EMBL:CP002687EnsemblPlants:AT4G08790EnsemblPlants:AT4G08790.1entrez:826449Gene3D:3.60.110.10
GeneID:826449Genevisible:Q94JV5GO:GO:0006807GO:GO:0009536GO:GO:0016810GO:GO:0046686Gramene:AT4G08790.1
hmmpanther:PTHR23088hmmpanther:PTHR23088:SF27HOGENOM:HOG000222700InParanoid:Q94JV5IntAct:Q94JV5InterPro:IPR003010KEGG:ath:AT4G08790
OMA:MCESNSTPaxDb:Q94JV5Pfam:PF00795Pfam:Q94JV5Pfscan:PS50263PhylomeDB:Q94JV5PIR:D85088
PRIDE:Q94JV5PRO:PR:Q94JV5ProMEX:Q94JV5PROSITE:PS50263ProteinModelPortal:Q94JV5Proteomes:UP000006548RefSeq:NP_567340.1
SMR:Q94JV5STRING:3702.AT4G08790.1SUPFAM:SSF56317TAIR:AT4G08790UniGene:At.22636UniProt:Q94JV5
Coordinates (TAIR10) chr4:-:5608489..5611118
Molecular Weight (calculated) 33972.80 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.02
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MNAYSVSLDF TKPSLFTRIT LSSQIPLTMA TTVNKTVRVA AAQMTSVNDL MTNFATCSRL VQEAALAGAK LICFPENFSF VGDKEGESVK IAEPLDGPVM
101: ERYCSLARDS NIWLSLGGFQ ERFDDTHLCN THVVIDDAGM IRDTYQKMHL FDVDVPGGSS YKESSFTVPG TKIVSVDSPV GRLGLTVCYD LRFPKIYQQL
201: RFEQKAQVLL VPSAFTKVTG EAHWEILLRA RAIETQCYVI AAAQAGKHNE KRESYGDTLI IDPWGTVVGR LPDRVSTGIV VADIDFSLID SVRTKMPIDK
301: QRVSIDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)