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AT4G08690.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G22180.2); Has 2740 Blast hits to 2738 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 909; Fungi - 613; Plants - 887; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y3Q0eggNOG:KOG1470EMBL:AC002983EMBL:AK227378EMBL:AK317442EMBL:AL161512EMBL:BT003080
EMBL:CP002687EnsemblPlants:AT4G08690EnsemblPlants:AT4G08690.1EnsemblPlants:AT4G08690.2entrez:826436Gene3D:3.40.525.10GeneID:826436
Gramene:AT4G08690.1Gramene:AT4G08690.2hmmpanther:PTHR10174hmmpanther:PTHR10174:SF148HOGENOM:HOG000237744InterPro:IPR001251InterPro:IPR011074
KEGG:ath:AT4G08690OMA:PEEICWEPfam:PF00650Pfam:PF03765Pfscan:PS50191PhylomeDB:O22270PIR:B85087
PIR:T00939PROSITE:PS50191Proteomes:UP000006548RefSeq:NP_001031598.1RefSeq:NP_192609.1SMART:SM00516SMART:SM01100
SMR:O22270STRING:3702.AT4G08690.1SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT4G08690UniGene:At.48833UniGene:At.71122
UniProt:O22270
Coordinates (TAIR10) chr4:-:5551521..5552713
Molecular Weight (calculated) 34435.00 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.59
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTNPVTNGF VKPVPTEEEQ AKIEEVRKLL GPLPEKLSSF CSDDAVLRYL RARNWHVKKA TKMLKETLKW RVQYKPEEIC WEEVAGEAET GKIYRSSCVD
101: KLGRPVLIMR PSVENSKSVK GQIRYLVYCM ENAVQNLPPG EEQMVWMIDF HGYSLANVSL RTTKETAHVL QEHYPERLAF AVLYNPPKFF EPFWKVARPF
201: LEPKTRNKVK FVYSDDPNTK VIMEENFDME KMELAFGGND DSGFNIEKHS ERMKEDDKKR LASLEGIVSA SLDSLSILSV SDGTASNSAH PSSHDVSEDE
301: H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)