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AT4G08685.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pollen Ole e 1 allergen and extensin family protein
Curator
Summary (TAIR10)
Encodes a protein, expressed in leaves, with similarity to pollen allergens.
Computational
Description (TAIR10)
SAH7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT1G78040.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXW5eggNOG:ENOG410YRT5EMBL:AJ133639EMBL:AK228554EMBL:AY074534EMBL:AY085717EMBL:AY114069
EMBL:CP002687EnsemblPlants:AT4G08685EnsemblPlants:AT4G08685.1entrez:826435GeneID:826435Gramene:AT4G08685.1hmmpanther:PTHR31614
hmmpanther:PTHR31614:SF5HOGENOM:HOG000240768KEGG:ath:AT4G08685OMA:ALPRCAQPfam:PF01190PhylomeDB:Q9SZY5Proteomes:UP000006548
RefSeq:NP_567338.1STRING:3702.AT4G08685.1TAIR:AT4G08685tair10-symbols:SAH7UniGene:At.48833UniGene:At.71122UniProt:Q9SZY5
Coordinates (TAIR10) chr4:+:5550563..5551259
Molecular Weight (calculated) 17667.10 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.20
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKAVLLVAL CFLPALAIAA RPNKNPFVVR GRVYCDTCLA GFETPASTYI SGAVVRLECK DRRTMELTYS HEARTDSTGS YKILVNEDHD EQFCDAMLVR
101: SSQLRCSNVS PGHDRARVTL TRFNGIASDD RFANNMGFLR DAAMPGCADI MKLYQETED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)