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AT4G08520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.807
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNARE-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNARE-like superfamily protein; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: clathrin vesicle coat, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT3G09800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:11711eggNOG:COG5541eggNOG:KOG3343EMBL:AF076275
EMBL:AK227943EMBL:AL161511EMBL:AY074506EMBL:AY085280
EMBL:AY150422EMBL:CP002687EnsemblPlants:AT4G08520EnsemblPlants:AT4G08520.1
entrez:826411GeneID:826411Genevisible:Q8H1F4GO:GO:0005886
GO:GO:0015031GO:GO:0016192GO:GO:0030663Gramene:AT4G08520.1
hmmpanther:PTHR11043hmmpanther:PTHR11043:SF8HOGENOM:HOG000214428InParanoid:Q8H1F4
IntAct:Q8H1F4InterPro:IPR011012InterPro:IPR022775iPTMnet:Q8H1F4
KEGG:ath:AT4G08520OMA:HVLRRNIPaxDb:Q8H1F4Pfam:PF01217
Pfam:Q8H1F4PhylomeDB:Q8H1F4PIR:T01831PRIDE:Q8H1F4
PRO:PR:Q8H1F4ProteinModelPortal:Q8H1F4Proteomes:UP000006548Reactome:R-ATH-199997
Reactome:R-ATH-6807878RefSeq:NP_567337.1SMR:Q8H1F4STRING:3702.AT4G08520.1
SUPFAM:SSF64356TAIR:AT4G08520UniGene:At.28793UniProt:Q8H1F4
Coordinates (TAIR10) chr4:+:5417887..5420295
Molecular Weight (calculated) 19877.70 Da
IEP (calculated) 4.31
GRAVY (calculated) 0.05
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGTNDSCPL VKNILLLDSE GKRVAVKYYS DDWATNASKL AFEKYVFSKT SKTNARTEAE ITLLESNIVV YKFAQDLHFF VTGGENENEL VLSSVLQGFF
101: DAVALLLRNN VEKMEALENL DLIFLCLDEM VDQGMVLETD ANVIAGKVAM QSAEASGSLS EQTLTQALAT AREHLARSLL T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)