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AT4G08460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1644)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G77770.1); Has 271 Blast hits to 248 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 271; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JA5JeggNOG:ENOG4111EATEMBL:AK317112EMBL:AL161511EMBL:AY074362EMBL:AY096463EMBL:CP002687
EMBL:DQ059095EnsemblPlants:AT4G08460EnsemblPlants:AT4G08460.1EnsemblPlants:AT4G08460.2EnsemblPlants:AT4G08460.3entrez:826405Gene3D:3.30.40.10
GeneID:826405GO:GO:0008270Gramene:AT4G08460.1Gramene:AT4G08460.2Gramene:AT4G08460.3hmmpanther:PTHR31197hmmpanther:PTHR31197:SF10
HOGENOM:HOG000239531IntAct:Q9M0T4InterPro:IPR012866InterPro:IPR013083KEGG:ath:AT4G08460OMA:DYVIEPYPfam:PF07800
PhylomeDB:Q9M0T4PIR:C85084Proteomes:UP000006548RefSeq:NP_001190691.1RefSeq:NP_192586.1RefSeq:NP_974521.1STRING:3702.AT4G08460.1
TAIR:AT4G08460UniGene:At.27797UniProt:Q9M0T4
Coordinates (TAIR10) chr4:-:5377378..5378202
Molecular Weight (calculated) 31302.40 Da
IEP (calculated) 9.62
GRAVY (calculated) -0.85
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRTKEQATL TRYPPCPRNP AKFNDINKAL QEKGYGKALK RKPWTGVTCP VCLEVPHNSV VLLCSSYHKG CRPYMCATGN RFSNCLEQYK KAYAKDEKSD
101: KPPELLCPLC RGQVKGWTVV EKERKYLNSK KRSCMNDECL FYGSYRQLKK HVKENHPRAK PRAIDPVLEA KWKKLEVERE RSDVISTVMS STPGAMVFGD
201: YVIEPYNGYD HQDDSDDYSD SSDDEMEGGV FELGAFDLGR LQPRSAAISS RGIRGMIIRN RWARSRGASR RRQT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)