AT4G08450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.973 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46450.1); Has 55059 Blast hits to 21265 proteins in 952 species: Archae - 84; Bacteria - 24337; Metazoa - 4372; Fungi - 1058; Plants - 20302; Viruses - 196; Other Eukaryotes - 4710 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:5365610..5371101 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 141679.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.89 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1234 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSHNWV YDVFTSFSGE DIRVTFLTHF LKELDRKMII AFKDNEIERG NSIGTELIQA IKDSRIAVVV FSKKYSSSSW CLNELVEIVN CKEIVIPVFY 0101: DLDPSDVRKQ EGEFGESFKE TCKNRTDYEI QRWGQALTNV ANIAGYHTRK PNNEAKLIEE ITNDVLDKLM KLTPSKDFDE FFGIEDHIKE LSLLLCLESE 0201: EVRMVGIWGP TGIGKTTIAR ALFNRIYRHF QGRVFIDRAF ISKSMAIYSR ANSDDYNLKL HLQEKLLSKL LDKKNLEINH LDAVKERLRQ MKVLIFIDDL 0301: DDQVVLEALA CQTQWFGHGS RIIVITKDKH LLRAYGIDHI YEVLLPSKDL AIKMFCRSAF RKDSPPNGFI ELAYDVVKRA GSLPLGLNIL GSYLRGRSKE 0401: DWIDMMPGLR NKLDGKIQKT LRVSYDGLAS EDDQAIFRHI ACIFNFEACS DIKKLLEDSG LNVTNGLINL VDKSLIRIEP KQKTVEMHCL LQETAREIIR 0501: AQSFDDPGKR EFLVDGKDIA DVLDNCSGTR KVLGISLDMD EIEELHLQVD AFKKMLNLRF LKLYTNTNIS EKEDKLLLPK EFNYLPNTLR LLSWQRFPMR 0601: CMPSDFFPKY LVKLLMPGSK LEKLWDGVMP LQCLKNMNLF GSENLKEFPN LSLATNLETL SLGFCLSLVE VPSTIGNLNK LTYLNMSGCH NLEKFPADVN 0701: LKSLSDLVLN GCSRLKIFPA ISSNISELCL NSLAVEEFPS NLHLENLVYL LIWGMTSVKL WDGVKVLTSL KTMHLRDSKN LKEIPDLSMA SNLLILNLEQ 0801: CISIVELPSS IRNLHNLIEL DMSGCTNLET FPTGINLQSL KRINLARCSR LKIFPDISTN ISELDLSQTA IEEVPLWIEN FSKLKYLIMG KCNMLEYVFL 0901: NISKLKHLKS VDFSDCGILS KADMYMLQVP NEASSSLPIN CVQKAELIFI NCYKLNQKAL IRQQFFLKKM ILPGEEVPFY FTHQTIGSSI GIPLLHILLS 1001: QQYFRFKACV VVDPKFVFPA RRYHVNIQVS CRFKGIYGNY FDYADQPHCF SPSQTDNYVY VFDCCFPLNK DNAPLAELDY DHVDIEFHLD DNYNHHKIKG 1101: CGIRLSEDDE SSDDDDDLSS ETDYSDECED SDDSDLGNEI DYSEDYEDRD TSDLGNETDY SEEYEDHDSS DLGNEYDYNE ECEENDDNDL VLETDHNEEC 1201: QDNDVEKKRS SKRMRVNFYI VHNSFPRSNV NFFI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)