AT4G08370.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Proline-rich extensin-like family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); Has 67424 Blast hits to 26094 proteins in 1154 species: Archae - 160; Bacteria - 6791; Metazoa - 27948; Fungi - 10095; Plants - 12206; Viruses - 1691; Other Eukaryotes - 8533 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:5301962..5303314 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 39401.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.65 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||
| Length | 350 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVNPSNWPSL LMLVLAFYVV VVPTSAQCKY SPQSPPPQPY VYSPPLPSPY VYKSPPPSPY LYSSPPPPPY VYNSPPPPPP YIYNSPPRPP YVYKSPPPPP 101: FVYSSPPPPT YIYNSPPPPP YVYKSVPRIT FIYSSPPPPP YVYNSAPRIP FIYSSPPPPP YVYNSAPRVL FIYSSPPPPP YVYNSPPPPP YVYESVPRIP 201: FIYSSPPPPP YVYNSAPRIP FIYSSPPPPP YVYNSAPRVP FIYSSPPPPP YVYKSVPRIP FIYSSPPPPP YVYNSAPRIP FIYSSLPPPP YVYNSAPRVP 301: FIYSSPPPPP YVYNSAPRIP FIYSSPPPHH MFTSLFLIFH HLQLSTTPSI |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)