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AT4G08370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Proline-rich extensin-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); Has 67424 Blast hits to 26094 proteins in 1154 species: Archae - 160; Bacteria - 6791; Metazoa - 27948; Fungi - 10095; Plants - 12206; Viruses - 1691; Other Eukaryotes - 8533 (source: NCBI BLink).
Protein Annotations
EMBL:AL109819EMBL:AL161511EMBL:CP002687EnsemblPlants:AT4G08370EnsemblPlants:AT4G08370.1entrez:826393GeneID:826393
GO:GO:0005199GO:GO:0009664Gramene:AT4G08370.1HOGENOM:HOG000153534InterPro:IPR006706KEGG:ath:AT4G08370OMA:PRIPFIY
Pfam:PF04554PIR:T14191Proteomes:UP000006548RefSeq:NP_192577.1STRING:3702.AT4G08370.1TAIR:AT4G08370TMHMM:TMhelix
UniGene:At.65339UniProt:Q9STN1
Coordinates (TAIR10) chr4:-:5301962..5303314
Molecular Weight (calculated) 39401.20 Da
IEP (calculated) 9.65
GRAVY (calculated) -0.33
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MVNPSNWPSL LMLVLAFYVV VVPTSAQCKY SPQSPPPQPY VYSPPLPSPY VYKSPPPSPY LYSSPPPPPY VYNSPPPPPP YIYNSPPRPP YVYKSPPPPP
101: FVYSSPPPPT YIYNSPPPPP YVYKSVPRIT FIYSSPPPPP YVYNSAPRIP FIYSSPPPPP YVYNSAPRVL FIYSSPPPPP YVYNSPPPPP YVYESVPRIP
201: FIYSSPPPPP YVYNSAPRIP FIYSSPPPPP YVYNSAPRVP FIYSSPPPPP YVYKSVPRIP FIYSSPPPPP YVYNSAPRIP FIYSSLPPPP YVYNSAPRVP
301: FIYSSPPPPP YVYNSAPRIP FIYSSPPPHH MFTSLFLIFH HLQLSTTPSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)