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AT4G08320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.965
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: protein phosphatase 5.2 (TAIR:AT2G42810.1); Has 13789 Blast hits to 9498 proteins in 788 species: Archae - 336; Bacteria - 3462; Metazoa - 3175; Fungi - 1138; Plants - 1489; Viruses - 0; Other Eukaryotes - 4189 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0457eggNOG:KOG0553EMBL:CP002687EnsemblPlants:AT4G08320
EnsemblPlants:AT4G08320.1entrez:826386ExpressionAtlas:F4JG04Gene3D:1.25.40.10
GeneID:826386Gramene:AT4G08320.1hmmpanther:PTHR22904hmmpanther:PTHR22904:SF289
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:IPR032374
ncoils:CoilPaxDb:F4JG04Pfam:PF07719Pfam:PF13414
Pfam:PF16546Pfscan:PS50005Pfscan:PS50293PhylomeDB:F4JG04
PRIDE:F4JG04PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:F4JG04
Proteomes:UP000006548RefSeq:NP_192572.2SMART:SM00028SMR:F4JG04
STRING:3702.AT4G08320.2SUPFAM:SSF48452TAIR:AT4G08320tair10-symbols:TPR8
UniGene:At.27988UniGene:At.71009UniProt:F4JG04
Coordinates (TAIR10) chr4:+:5252853..5254990
Molecular Weight (calculated) 46541.20 Da
IEP (calculated) 4.46
GRAVY (calculated) -0.63
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKLTTDSPL CRKIVRSFLN FLDSVEVAPG VDEEGLEVAR ECLREAFKLN SDSSRDDDDD SFKPISLVNL FTSLDNNETI PPPPPPPVAA TTQDPSSSGS
101: HVSVDTCKEP SFTGTSRDEL FGQLFGALEK VRYFRNTPDG DDDPAQLEKA TRIFHDCVNE MEKSGCQTFD VNSLAETLKC QGNKAMQSNL YLEAVELYSF
201: AIALTDKNAV FYCNRAAAYT QINMCSEAIK DCLKSIEIDP NYSKAYSRLG LAYYAQGKYA EAIEKGFKKA LLLDPHNESV KENIRVAEQK IREEQQRQRR
301: SQNTSTFYTQ EPEMGGGQGI PSQFSMPVNP DLMSMFMNMA GNTFPGNHSR NNEGGAGGDG TRNGADEPEI HVGGNINIDL GGTEQMPEDL SGALRSMMQM
401: FGGSMGGTGN NNPQDSNGAQ GRPSGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)