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AT4G08310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins in 1618 species: Archae - 142; Bacteria - 4400; Metazoa - 24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other Eukaryotes - 15245 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH58eggNOG:ENOG4111NQTEMBL:AL080252EMBL:AL161511EMBL:AY091128EMBL:AY142689EMBL:CP002687
EnsemblPlants:AT4G08310EnsemblPlants:AT4G08310.1entrez:826385GeneID:826385Gramene:AT4G08310.1hmmpanther:PTHR15410hmmpanther:PTHR15410:SF2
HOGENOM:HOG000243851InterPro:IPR019098KEGG:ath:AT4G08310ncoils:CoilOMA:ILQEPANPfam:PF09649PhylomeDB:Q9SUE9
PIR:T10558Proteomes:UP000006548RefSeq:NP_192571.1SMART:SM01082STRING:3702.AT4G08310.1TAIR:AT4G08310UniGene:At.33761
UniProt:Q9SUE9
Coordinates (TAIR10) chr4:-:5249047..5252139
Molecular Weight (calculated) 56238.80 Da
IEP (calculated) 4.60
GRAVY (calculated) -1.24
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDGDSTTTS AMEISGDKID LKDGEATTPP KTDIESQILA AMQSRVTYLR DKADNFTFEG VRRLLEEDLK LEKHALDVHK SFVKQHLVQC LAGAENDETS
101: ENSLETEKKD DVTPVKEAAE LSKEHTTKKD GKEDMTGDDE KTKDSPVMGL LTEENTSKSV AEQTKDEDKE VLQSDIKKAL RKRSSYIKAN SEKITMGLLR
201: RLLEQDLKLE KYSLDPYKKF INGELDEILQ AHEATQSSTK AQRKPVSKKV KSTPAKNSDS EEMFDSDGED EEEDKEVAVK KKMAEKRKLS KSEGTGKRKR
301: EKEKPASAKK TKQTDSQSDS DAGEKAPSSE KSVKKPETPT TGYGKRVEHL KSIIKSCGMS ISPSVYRKAK QAPEEKREEI LIKELKELLA KEGLSANPSE
401: KEIKEVKKRK ERTKELEGID TSNIVSSSRR RSSASFVPPP KPIKAEESES DDSEDSENEE DEDEEVVVEE EEEEEDEGGS EDGGEGSQNE GELKTEDGGE
501: EESE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)