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AT4G08290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.971
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT2G39510.1); Has 3333 Blast hits to 3320 proteins in 592 species: Archae - 15; Bacteria - 1495; Metazoa - 4; Fungi - 2; Plants - 1226; Viruses - 0; Other Eukaryotes - 591 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITDVeggNOG:ENOG410YBPNEMBL:AK118606EMBL:AL080252EMBL:AL161511EMBL:AY088024EMBL:BT005333
EMBL:CP002687EnsemblPlants:AT4G08290EnsemblPlants:AT4G08290.1entrez:826383GeneID:826383Genevisible:Q9SUF1GO:GO:0003333
GO:GO:0005886GO:GO:0015171GO:GO:0016021GO:GO:0032973GO:GO:0043090GO:GO:0080144hmmpanther:PTHR31218
hmmpanther:PTHR31218:SF38HOGENOM:HOG000237441InParanoid:Q9SUF1InterPro:IPR000620InterPro:IPR030184iPTMnet:Q9SUF1KEGG:ath:AT4G08290
OMA:WAVGWDAPANTHER:PTHR31218PaxDb:Q9SUF1Pfam:PF00892Pfam:Q9SUF1PhylomeDB:Q9SUF1PIR:T10556
PRO:PR:Q9SUF1ProteinModelPortal:Q9SUF1Proteomes:UP000006548RefSeq:NP_192569.1RefSeq:NP_974519.1STRING:3702.AT4G08290.1SUPFAM:0043518
TAIR:AT4G08290TMHMM:TMhelixUniGene:At.33763UniProt:Q9SUF1
Coordinates (TAIR10) chr4:+:5239088..5240861
Molecular Weight (calculated) 41725.70 Da
IEP (calculated) 8.79
GRAVY (calculated) 0.52
Length 384 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGVSATMHK LRPYLLMIFL QFGAAGTYIV IMATLNQGQN RYVVIVYRNL VAALVLAPFA LIFERKVRPK MTLSVLWKIM ALGFLEPVLD QGFGYLGMNM
101: TSATYTSAIM NILPSVTFII AWILRMEKVN IAEVRSKAKI IGTLVGLGGA LVMTLYKGPL IPLPWSNPNM DQQNGHTNNS QDHNNWVVGT LLILLGCVAW
201: SGFYVLQSIT IKTYPADLSL SALICLAGAV QSFAVALVVE RHPSGWAVGW DARLFAPLYT GIVSSGITYY VQGMVMKTRG PVFVTAFNPL CMILVALIAS
301: FILHEQIHFG CVIGGAVIAA GLYMVVWGKG KDYEVSGLDI LEKNSLQELP ITTKSEDDNK LVSSISDNSN VTIPGGAHSN TSGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)